miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 109 bits (55), Expect = 7e-24
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 aacgggatattggtccggttcaataagaaagcaatgctcaaaatgtttttgggtcctgtt 65
|||||||||||||||||||||||||||||| || ||||||||||| || |||| |||| |
Sbjct: 6 aacgggatattggtccggttcaataagaaaacagtgctcaaaatg-ttatgggccctgct 64
Query: 66 ttttcattgagccgtgccaatatcacg 92
|||| ||||||||||||||||||||||
Sbjct: 65 ttttgattgagccgtgccaatatcacg 91
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 7 acgggatattggtccggttcaataagaaagcaatgctcaaaatgtttttgggtcctgttt 66
||||||||||||| |||||||||||||||||| ||||| ||| |||||| || ||| ||
Sbjct: 7 acgggatattggtgcggttcaataagaaagcagtgctcgcaatctttttgagttctggtt 66
Query: 67 tttcattgagccgtgccaatatcacg 92
||| ||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 85.7 bits (43), Expect = 1e-16
Identities = 77/87 (88%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 aacgggatattggtccggttcaataagaaagcaatgctcaaaatgtttttgggtcctgtt 65
|||||||||||||||||||||||||||||||||| |||| ||| | ||| | | ||||
Sbjct: 6 aacgggatattggtccggttcaataagaaagcaaagctcgaaacg-tttggagctttgtt 64
Query: 66 ttttcattgagccgtgccaatatcacg 92
|||| ||||||||||||||||||||||
Sbjct: 65 ttttgattgagccgtgccaatatcacg 91
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 69.9 bits (35), Expect = 6e-12
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 aacgggatattggtccggttcaataagaaagcaatgctcaaaatgtttttgggtcctgtt 65
|||||||||||||||||||||||||||||| || ||||| || | ||| || ||| |
Sbjct: 6 aacgggatattggtccggttcaataagaaaacagtgctc-tgatcgtgttgagttctgct 64
Query: 66 ttttcattgagccgtgccaatatcacg 92
|||| ||||||||||||||||||||||
Sbjct: 65 ttttgattgagccgtgccaatatcacg 91
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 61 ctgttttttcattgagccgtgccaatatcacg 92
||||| ||| ||||||||||||||||||||||
Sbjct: 58 ctgttgtttgattgagccgtgccaatatcacg 89
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 aacgggatattggtccggttcaataagaaagc 37
|||||||||||||| ||||||||| |||||||
Sbjct: 6 aacgggatattggtgcggttcaatcagaaagc 37
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 71 attgagccgtgccaatatcacg 92
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 62 tgttttttcattgagccgtgccaatatcacg 92
|||| ||| ||||||||||||||||||||||
Sbjct: 60 tgttgtttgattgagccgtgccaatatcacg 90
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 62 tgttttttcattgagccgtgccaatatcacg 92
|||| ||| ||||||||||||||||||||||
Sbjct: 60 tgttgtttgattgagccgtgccaatatcacg 90
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 62 tgttttttcattgagccgtgccaatatcacg 92
|||| ||| ||||||||||||||||||||||
Sbjct: 65 tgttatttgattgagccgtgccaatatcacg 95
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 ttttcattgagccgtgccaatatcacg 92
|||| ||||||||||||||||||||||
Sbjct: 67 ttttgattgagccgtgccaatatcacg 93
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 74 attgagccgtgccaatatcacg 95
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 71 attgagccgtgccaatatcacg 92
>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 72 attgagccgtgccaatatcacg 93
>RF00643;MIR171_1;AC215407.2/42962-42863 4081:Solanum lycopersicum
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacg 91
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgttttttcattgagccgtgccaatatcac 91
|||| ||| |||||||||||||||||||||
Sbjct: 63 tgttatttgattgagccgtgccaatatcac 92
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 82 attgagccgtgccaatatcacg 103
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 85 attgagccgtgccaatatcacg 106
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 71 attgagccgtgccaatatcacg 92
