miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02025;mir-3017;ABLF01015562.1/4178-4089 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 60.0 bits (30), Expect = 3e-09
Identities = 60/70 (85%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcaacggact-----gagccctccggtctgtcacg 55
||||||||||||||||||||||||||| |||||| | ||| |||||||||||||
Sbjct: 11 ccgtgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacg 70
Query: 56 gaacacggga 65
||||||||||
Sbjct: 71 gaacacggga 80
>RF02025;mir-3017;ABLF01060431.1/1763-1834 7029:Acyrthosiphon
pisum (pea aphid)
Length = 72
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggc 27
|||||||||||||||||||||||||||
Sbjct: 11 ccgtgttctgtgactgactcggctggc 37
>RF02025;mir-3017;ABLF01045617.1/3490-3417 7029:Acyrthosiphon
pisum (pea aphid)
Length = 74
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 cgtgttctgtgactgactcggctggc 27
||||||||||||||||||||||||||
Sbjct: 11 cgtgttctgtgactgactcggctggc 36
>RF02025;mir-3017;ABLF01017001.1/8426-8515 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcaacggactg 36
|||||||||||||||||||||| |||| |||||||
Sbjct: 11 ccgtgttctgtgactgactcggatggcgccggactg 46
>RF02025;mir-3017;ABLF01023650.1/3784-3695 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcaacggactg 36
||||||||||||||||||| ||||||| |||||||
Sbjct: 11 ccgtgttctgtgactgactaggctggcgccggactg 46
>RF02025;mir-3017;ABLF01028168.1/148-78 7029:Acyrthosiphon pisum
(pea aphid)
Length = 71
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggc 27
|||||||||||||| ||||||||||||
Sbjct: 11 ccgtgttctgtgaccgactcggctggc 37
>RF02025;mir-3017;ABLF01001710.1/19513-19583 7029:Acyrthosiphon
pisum (pea aphid)
Length = 71
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggc 27
|||||||||||| ||||||||||||||
Sbjct: 11 ccgtgttctgtgcctgactcggctggc 37
>RF02025;mir-3017;ABLF01045416.1/7109-7020 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 58/70 (82%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcaacggactga-----gccctccggtctgtcacg 55
||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||
Sbjct: 11 ccgtgttctgtgactaactcgactggcgccggactgacgggcgcccgccggtctgtcaca 70
Query: 56 gaacacggga 65
|| |||||||
Sbjct: 71 gatcacggga 80
>RF02025;mir-3017;ABLF01008541.1/2546-2457 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 3 gtgttctgtgactgactcggctggcaacggactg 36
||||||||||||||| ||||||||| |||||||
Sbjct: 13 gtgttctgtgactgattcggctggcgccggactg 46
>RF02025;mir-3017;ABLF01038493.1/296-207 7029:Acyrthosiphon pisum
(pea aphid)
Length = 90
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gccctccggtctgtcacggaacacg 62
|||| ||||||||||||||||||||
Sbjct: 53 gcccgccggtctgtcacggaacacg 77
>RF02025;mir-3017;ABLF01049594.1/1510-1421 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 42.1 bits (21), Expect = 8e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 4 tgttctgtgactgactcggctggcaacggactg 36
|||||||||||||||| ||||||| |||||||
Sbjct: 14 tgttctgtgactgactgggctggcgccggactg 46
>RF02025;mir-3017;ABLF01022984.1/791-702 7029:Acyrthosiphon pisum
(pea aphid)
Length = 90
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctg 25
||||||||||||||||||| |||||
Sbjct: 11 ccgtgttctgtgactgactgggctg 35
>RF02025;mir-3017;ABLF01010587.1/133-222 7029:Acyrthosiphon pisum
(pea aphid)
Length = 90
Score = 42.1 bits (21), Expect = 8e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 4 tgttctgtgactgactcggctggcaacggactg 36
||||||||||||||||| |||||| |||||||
Sbjct: 14 tgttctgtgactgactcagctggcgccggactg 46
