miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02025;mir-3017;ABLF01015562.1/4178-4089 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 139 bits (70), Expect = 5e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ccgtgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacg 70
Query: 61 gaacacggga 70
||||||||||
Sbjct: 71 gaacacggga 80
>RF02025;mir-3017;ABLF01038493.1/296-207 7029:Acyrthosiphon pisum
(pea aphid)
Length = 90
Score = 95.6 bits (48), Expect = 7e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 4 tgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacggaa 63
||||||||||||||||||| ||| |||||||||||||| ||| |||||||||||||||||
Sbjct: 14 tgttctgtgactgactcggttggtgccggactggcgggcgcccgccggtctgtcacggaa 73
Query: 64 cacg 67
||||
Sbjct: 74 cacg 77
>RF02025;mir-3017;ABLF01023650.1/3784-3695 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 93.7 bits (47), Expect = 3e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacg 60
||||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||||
Sbjct: 11 ccgtgttctgtgactgactaggctggcgccggactggcgggcgcccgctggtctgtcact 70
Query: 61 gaacacg 67
|||||||
Sbjct: 71 gaacacg 77
>RF02025;mir-3017;ABLF01017001.1/8426-8515 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacg 60
|||||||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||
Sbjct: 11 ccgtgttctgtgactgactcggatggcgccggactggtgggcgcccgccggtctgtcaca 70
Query: 61 gaaca 65
|||||
Sbjct: 71 gaaca 75
>RF02025;mir-3017;ABLF01008541.1/2546-2457 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 3 gtgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacgga 62
||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 13 gtgttctgtgactgattcggctggcgccggactggcgggagcccgacggtctgtcacgga 72
Query: 63 acacg 67
||||
Sbjct: 73 ccacg 77
>RF02025;mir-3017;ABLF01045416.1/7109-7020 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacg 60
||||||||||||||| ||||| |||||||||||||| |||| ||| |||||||||||||
Sbjct: 11 ccgtgttctgtgactaactcgactggcgccggactgacgggcgcccgccggtctgtcaca 70
Query: 61 gaacacggga 70
|| |||||||
Sbjct: 71 gatcacggga 80
>RF02025;mir-3017;ABLF01049594.1/1510-1421 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 4 tgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacggaa 63
|||||||||||||||| ||||||||||||||||| ||| ||| ||||||| ||||| ||
Sbjct: 14 tgttctgtgactgactgggctggcgccggactggggggtgcccgccggtcggtcacagag 73
Query: 64 cacggga 70
|||||||
Sbjct: 74 cacggga 80
>RF02025;mir-3017;ABLF01010587.1/133-222 7029:Acyrthosiphon pisum
(pea aphid)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 4 tgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacggaa 63
||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||| |||
Sbjct: 14 tgttctgtgactgactcagctggcgccggactgtcggacgcccgccggtctgtcacagaa 73
Query: 64 cac 66
|||
Sbjct: 74 cac 76
>RF02025;mir-3017;ABLF01011361.1/773-861 7029:Acyrthosiphon pisum
(pea aphid)
Length = 89
Score = 73.8 bits (37), Expect = 2e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 2 cgtgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacgg 61
|||||||||| ||||||||||||||||| |||||||||| ||| ||| ||||||||| |
Sbjct: 12 cgtgttctgttcctgactcggctggcgccagactggcgggcgcc-gccagtctgtcacag 70
Query: 62 aacacggga 70
|||||||||
Sbjct: 71 aacacggga 79
>RF02025;mir-3017;ABLF01022984.1/791-702 7029:Acyrthosiphon pisum
(pea aphid)
Length = 90
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacg 60
||||||||||||||||||| ||||| || |||||||||||| ||| || ||||||||||
Sbjct: 11 ccgtgttctgtgactgactgggctgacgtcggactggcgggcgcccgctggtctgtcaca 70
Query: 61 gaac 64
||||
Sbjct: 71 gaac 74
>RF02025;mir-3017;ABLF01024519.1/1543-1631 7029:Acyrthosiphon
pisum (pea aphid)
Length = 89
Score = 61.9 bits (31), Expect = 9e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 12 gactgactcggctggcgccggactggcgggggccagccggtctgtcacggaacac 66
||||||||||||||||||| ||||||| || ||| |||||| |||||| ||||||
Sbjct: 21 gactgactcggctggcgccagactggcaggcgcccgccggtgtgtcacagaacac 75
>RF02025;mir-3017;ABLF01045617.1/3490-3417 7029:Acyrthosiphon
pisum (pea aphid)
Length = 74
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 cgtgttctgtgactgactcggctggcgcc 30
|||||||||||||||||||||||||||||
Sbjct: 11 cgtgttctgtgactgactcggctggcgcc 39
>RF02025;mir-3017;ABLF01001710.1/19513-19583 7029:Acyrthosiphon
pisum (pea aphid)
Length = 71
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcgccgg 32
|||||||||||| |||||||||||||||||||
Sbjct: 11 ccgtgttctgtgcctgactcggctggcgccgg 42
>RF02025;mir-3017;ABLF01060431.1/1763-1834 7029:Acyrthosiphon
pisum (pea aphid)
Length = 72
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcg 28
||||||||||||||||||||||||||||
Sbjct: 11 ccgtgttctgtgactgactcggctggcg 38
>RF02025;mir-3017;ABLF01028168.1/148-78 7029:Acyrthosiphon pisum
(pea aphid)
Length = 71
Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcgccggac 34
|||||||||||||| |||||||||||||| ||||
Sbjct: 11 ccgtgttctgtgaccgactcggctggcgcgggac 44
>RF02025;mir-3017;ABLF01048043.1/2239-2342 7029:Acyrthosiphon
pisum (pea aphid)
Length = 104
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 tgtgactgactcggctggcgccggactggc 38
||||||||||| ||||||||||||||||||
Sbjct: 18 tgtgactgactgggctggcgccggactggc 47
>RF02025;mir-3017;ABLF01027023.1/4334-4423 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 52.0 bits (26), Expect = 9e-07
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 1 ccgtgttctgtgactgactcggctggcgccggactggcgggggccagccggtctgtcacg 60
|||||||||| |||||||||||| ||| ||| ||||||| ||| || ||||||||||
Sbjct: 11 ccgtgttctggtcctgactcggctgacgctggattggcgggcgcccgctggtctgtcaca 70
Query: 61 gaacacggga 70
|| |||||||
Sbjct: 71 gaccacggga 80
>RF02025;mir-3017;ABLF01021203.1/11724-11652 7029:Acyrthosiphon
pisum (pea aphid)
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 tgttctgtgactgactcggctggcgcc 30
|||||| ||||||||||||||||||||
Sbjct: 14 tgttctttgactgactcggctggcgcc 40
>RF02025;mir-3017;ABLF01016997.1/4515-4441 7029:Acyrthosiphon
pisum (pea aphid)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 tgttctgtgactgactcggctggcgcc 30
|||||||| ||||||||||||||||||
Sbjct: 14 tgttctgttactgactcggctggcgcc 40
>RF02025;mir-3017;ABLF01039878.1/12269-12181 7029:Acyrthosiphon
pisum (pea aphid)
Length = 89
Score = 42.1 bits (21), Expect = 9e-04
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 11 tgactgactcggctggcgccggactggcgggggccagccggtctgtcacggaacacg 67
||||||| ||||||||||| || ||||||| ||| ||||| |||||| |||||||
Sbjct: 20 tgactgaatcggctggcgctagattggcgggtgcccaccggtttgtcacagaacacg 76
>RF02025;mir-3017;ABLF01001776.1/4915-4841 7029:Acyrthosiphon
pisum (pea aphid)
Length = 75
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 ttctgtgactgactcggctggcgcc 30
||||||||||||||| |||||||||
Sbjct: 16 ttctgtgactgactccgctggcgcc 40
>RF02025;mir-3017;ABLF01014961.1/9234-9146 7029:Acyrthosiphon
pisum (pea aphid)
Length = 89
Score = 42.1 bits (21), Expect = 9e-04
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 11 tgactgactcggctggcgccggactggcgggggccagccggtctgtcacggaacacg 67
||||| ||||||||||||| |||||||||| | || | ||| |||||| |||||||
Sbjct: 20 tgacttactcggctggcgctagactggcgggcgtcaactggtttgtcacagaacacg 76
