miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
gambiae str. PEST
Length = 78
Score = 99.6 bits (50), Expect = 5e-21
Identities = 72/78 (92%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 gtctgttcacatcttaccgggcagcattagatat-ttttgaaatacttctaatactgtca 59
|||||||||||||||||||||||||||||||||| || | ||| ||||||||||||||
Sbjct: 1 gtctgttcacatcttaccgggcagcattagatatgttatcggatatttctaatactgtca 60
Query: 60 ggtaaagatgtcgtccga 77
||||||||||||||||||
Sbjct: 61 ggtaaagatgtcgtccga 78
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
Length = 79
Score = 91.7 bits (46), Expect = 1e-18
Identities = 70/77 (90%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 2 tctgttcacatcttaccgggcagcattagat--atttttgaaatacttctaatactgtca 59
||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtca 61
Query: 60 ggtaaagatgtcgtccg 76
|||||||||||||||||
Sbjct: 62 ggtaaagatgtcgtccg 78
>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
(red flour beetle)
Length = 77
Score = 75.8 bits (38), Expect = 7e-14
Identities = 68/77 (88%), Gaps = 7/77 (9%)
Strand = Plus / Plus
Query: 3 ctgttcacatcttaccgggcagcattagat---atttttgaaatacttctaatactgtca 59
||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 3 ctgttaacatcttaccgggcagcattagattacatttt----atacttctaatactgtca 58
Query: 60 ggtaaagatgtcgtccg 76
|||||||||||| ||||
Sbjct: 59 ggtaaagatgtcctccg 75
>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
corporis (human body louse)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 3 ctgttcacatcttaccgggcagcattagatatttttgaaatacttctaatactgtcaggt 62
||||| |||||||||||||||||||||||| ||| || || |||||||||||||||||
Sbjct: 3 ctgtttacatcttaccgggcagcattagattgattttaagtaattctaatactgtcaggt 62
Query: 63 aaagatgtc 71
|| ||||||
Sbjct: 63 aatgatgtc 71
>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
willistoni
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 68/78 (87%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 2 tctgttcacatcttaccgggcagcattagatatt---tttgaaatacttctaatactgtc 58
||||||||||||||||||||||||||||||| || | | ||| ||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagattttgtactatagatatctctaatactgtc 61
Query: 59 aggtaaagatgtcgtccg 76
||||||||||||||||||
Sbjct: 62 aggtaaagatgtcgtccg 79
>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
bee)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 66/76 (86%), Gaps = 8/76 (10%)
Strand = Plus / Plus
Query: 2 tctgttcacatcttaccgggcagcattagatatttttgaaat---acttctaatactgtc 58
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattaga-----ttgaagttgaccttctaatactgtc 56
Query: 59 aggtaaagatgtcgtc 74
||||||||||||||||
Sbjct: 57 aggtaaagatgtcgtc 72
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
silkworm)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 46 ttctaatactgtcaggtaaagatgtcgtccg 76
|||||||||||||||||||||||||||||||
Sbjct: 46 ttctaatactgtcaggtaaagatgtcgtccg 76
>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 ttctaatactgtcaggtaaagatgtc 71
||||||||||||||||||||||||||
Sbjct: 43 ttctaatactgtcaggtaaagatgtc 68
