miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus
trichocarpa
Length = 317
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 7 tgtttggaatgaagtttgatccaagatcctt 37
|||||||||||||||||||||||||||||||
Sbjct: 3 tgtttggaatgaagtttgatccaagatcctt 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 288 gatctcggaccaggcttcattc 309
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus
trichocarpa
Length = 324
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 7 tgtttggaatgaagtttgatccaagatcctt 37
|||||||||||||||||||||||||||||||
Sbjct: 3 tgtttggaatgaagtttgatccaagatcctt 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 295 gatctcggaccaggcttcattc 316
>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
Length = 122
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tgtttggaatgaagtttgatccaagatcctt 37
|||||||||||| ||||||||||||||||||
Sbjct: 3 tgtttggaatgaggtttgatccaagatcctt 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattcttgaca 86
|||||||||||||||||||||| |||||
Sbjct: 93 gatctcggaccaggcttcattcctgaca 120
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 tgtttggaatgaagtttgatccaagatc 34
|||||||||||| |||||||||||||||
Sbjct: 3 tgtttggaatgaggtttgatccaagatc 30
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 137 gatctcggaccaggcttcattc 158
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 gggatctcggaccaggcttcattc 80
||||||||||||||||||||||||
Sbjct: 90 gggatctcggaccaggcttcattc 113
>RF00075;mir-166;AC138001.2/40361-40495 39947:Oryza sativa
Japonica Group
Length = 135
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 tgtttggaatgaagtttgatccaagatc 34
||||||||||| ||||||||||||||||
Sbjct: 3 tgtttggaatgcagtttgatccaagatc 30
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 ggatctcggaccaggcttcattc 80
|||||||||||||||||||||||
Sbjct: 83 ggatctcggaccaggcttcattc 105
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 54 ttagggatctcggaccaggcttcattc 80
|||| ||||||||||||||||||||||
Sbjct: 91 ttagtgatctcggaccaggcttcattc 117
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 ggatctcggaccaggcttcattc 80
|||||||||||||||||||||||
Sbjct: 105 ggatctcggaccaggcttcattc 127
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
(papaya)
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 109 gatctcggaccaggcttcattc 130
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus
trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 65 gatctcggaccaggcttcattc 86
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus
trichocarpa
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 63 gatctcggaccaggcttcattc 84
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 65 gatctcggaccaggcttcattc 86
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 63 gatctcggaccaggcttcattc 84
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 152 gatctcggaccaggcttcattc 173
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 61 gatctcggaccaggcttcattc 82
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 90 gatctcggaccaggcttcattc 111
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 85 gatctcggaccaggcttcattc 106
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 68 gatctcggaccaggcttcattc 89
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 95 gatctcggaccaggcttcattc 116
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 185 gatctcggaccaggcttcattc 206
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 89 gatctcggaccaggcttcattc 110
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 162 gatctcggaccaggcttcattc 183
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 68 gatctcggaccaggcttcattc 89
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 131 gatctcggaccaggcttcattc 152
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 151 gatctcggaccaggcttcattc 172
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 150 gatctcggaccaggcttcattc 171
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gatctcggaccaggcttcattc 80
||||||||||||||||||||||
Sbjct: 74 gatctcggaccaggcttcattc 95
