miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00743;mir-308;AAGE02006324.1/6463-6527 7159:Aedes aegypti
(yellow fever mosquito)
Length = 65
Score = 129 bits (65), Expect = 5e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 9 ttcgcggtatattcttgtggcttgatgcatttgaaaaatctcaaatcacaggagtatact 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcgcggtatattcttgtggcttgatgcatttgaaaaatctcaaatcacaggagtatact 60
Query: 69 gtgag 73
|||||
Sbjct: 61 gtgag 65
>RF00743;mir-308;AAWU01008421.1/27722-27788 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 67
Score = 56.0 bits (28), Expect = 6e-08
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 9 ttcgcggtatattcttgtggcttgatgcatttgaaaaat--ctcaaatcacaggagtata 66
||||| ||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 1 ttcgcagtatattcttgtggcttgatgtgttagaaatcgtgctcaaatcacaggagtata 60
Query: 67 ctgtgag 73
|||||||
Sbjct: 61 ctgtgag 67
>RF00743;mir-308;ABKQ02024255.1/111320-111257 377270:Anopheles
gambiae S
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 tcaaatcacaggagtatactgtgag 73
|||||||||||||||||||||||||
Sbjct: 40 tcaaatcacaggagtatactgtgag 64
>RF00743;mir-308;AAPU01010142.1/147078-147139 7230:Drosophila
mojavensis
Length = 62
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 tcaaatcacaggagtatactgtgag 73
||||||||||||| |||||||||||
Sbjct: 38 tcaaatcacaggattatactgtgag 62
