miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
bee)
Length = 74
Score = 147 bits (74), Expect = 3e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 7 gatgctgttccgtgcttccttacttcccatagtggatgcgacgtatggaatgtaaagaag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgctgttccgtgcttccttacttcccatagtggatgcgacgtatggaatgtaaagaag 60
Query: 67 tatggagctgcgcc 80
||||||||||||||
Sbjct: 61 tatggagctgcgcc 74
>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
(jewel wasp)
Length = 74
Score = 105 bits (53), Expect = 9e-23
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 11 ctgttccgtgcttccttacttcccatagtggatgcgacgtatggaatgtaaagaagtatg 70
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 5 ctgttccgtgcttccttacttcccatagtgcacgtgacgtatggaatgtaaagaagtatg 64
Query: 71 gagctgcgc 79
|||| ||||
Sbjct: 65 gagccgcgc 73
>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
(red flour beetle)
Length = 74
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 13 gttccgtgcttccttacttcccatagtggatgcgacgtatggaatgtaaagaagtatgga 72
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 7 gttccgtgcttccttacttcccatagtgctttaaacgtatggaatgtaaagaagtatgga 66
Query: 73 gc 74
||
Sbjct: 67 gc 68
>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
silkworm)
Length = 75
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 13 gttccgtgcttccttacttcccatagtggatgcga-cgtatggaatgtaaagaagtatgg 71
||||||||||||||||||||||||||| || | | ||||||||||||||||||||||
Sbjct: 7 gttccgtgcttccttacttcccatagtcattgtaatcatatggaatgtaaagaagtatgg 66
Query: 72 agctgcgc 79
||||||||
Sbjct: 67 agctgcgc 74
>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
(pea aphid)
Length = 95
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 45 cgacgtatggaatgtaaagaagtatggagc 74
||||||||||||||||||||||||||||||
Sbjct: 63 cgacgtatggaatgtaaagaagtatggagc 92
>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
corporis (human body louse)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tatggaatgtaaagaagtatggagc 74
|||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggagc 68
>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
(yellow fever mosquito)
Length = 77
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tatggaatgtaaagaagtatggagc 74
|||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggagc 71
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tatggaatgtaaagaagtatggagc 74
|||||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatggagc 73
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tatggaatgtaaagaagtatggagc 74
|||||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatggagc 73
>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
grimshawi
Length = 77
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tatggaatgtaaagaagtatggagc 74
|||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggagc 71
>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
mojavensis
Length = 77
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tatggaatgtaaagaagtatggagc 74
|||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggagc 71
>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
(black-legged tick)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 gtatggaatgtaaagaagtatggag 73
|||||||||||||||||||||||||
Sbjct: 49 gtatggaatgtaaagaagtatggag 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 ccgtgcttccttacttcccata 37
||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccata 31
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 gtatggaatgtaaagaagtatg 70
||||||||||||||||||||||
Sbjct: 45 gtatggaatgtaaagaagtatg 66
