miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37570_ngi-mir-2:mirbase
Length = 78
Score = 115 bits (58), Expect = 6e-27
Identities = 74/78 (94%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 20 catgcttttaccatcaaagttggtttgtcatagagat-cgactatcacagccagctttga 78
||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||
Sbjct: 1 catgcttttaccatcaaagctggtttgtcatagggcttcgactatcacagccagctttga 60
Query: 79 tgagcaaaattgtgtccg 96
||||||||||||||||||
Sbjct: 61 tgagcaaaattgtgtccg 78
>37600_nlo-mir-2:mirbase
Length = 78
Score = 115 bits (58), Expect = 6e-27
Identities = 74/78 (94%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 20 catgcttttaccatcaaagttggtttgtcatagagat-cgactatcacagccagctttga 78
||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||
Sbjct: 1 catgcttttaccatcaaagctggtttgtcatagggcttcgactatcacagccagctttga 60
Query: 79 tgagcaaaattgtgtccg 96
||||||||||||||||||
Sbjct: 61 tgagcaaaattgtgtccg 78
>37633_nvi-mir-2c:mirbase
Length = 102
Score = 115 bits (58), Expect = 6e-27
Identities = 74/78 (94%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 20 catgcttttaccatcaaagttggtttgtcatagagat-cgactatcacagccagctttga 78
||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||
Sbjct: 21 catgcttttaccatcaaagctggtttgtcatagggcttcgactatcacagccagctttga 80
Query: 79 tgagcaaaattgtgtccg 96
||||||||||||||||||
Sbjct: 81 tgagcaaaattgtgtccg 98
>35045_api-mir-2c:mirbase
Length = 65
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 gactatcacagccagctttgatgagca 84
|||||||||||||||||||||||||||
Sbjct: 39 gactatcacagccagctttgatgagca 65
>35169_aae-mir-2c:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 ctatcacagccagctttgatgagcaa 85
||||||||||||||||||||||||||
Sbjct: 49 ctatcacagccagctttgatgagcaa 74
>35272_aga-mir-2-2:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 ctatcacagccagctttgatgagcaa 85
||||||||||||||||||||||||||
Sbjct: 58 ctatcacagccagctttgatgagcaa 83
>35514_bmo-mir-2a-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 actatcacagccagctttgatgagca 84
||||||||||||||||||||||||||
Sbjct: 52 actatcacagccagctttgatgagca 77
>37691_tca-mir-2c:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 ctatcacagccagctttgatgagca 84
|||||||||||||||||||||||||
Sbjct: 48 ctatcacagccagctttgatgagca 72
>37692_tca-mir-2c:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 ctatcacagccagctttgatgagca 84
|||||||||||||||||||||||||
Sbjct: 48 ctatcacagccagctttgatgagca 72
>34960_isc-mir-2a:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 61 tatcacagccagctttgatgagc 83
>34996_dpu-mir-2a:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 61 tatcacagccagctttgatgagc 83
>34997_dpu-mir-2b:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 61 tatcacagccagctttgatgagc 83
>35043_api-mir-2a:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 39 tatcacagccagctttgatgagc 61
>35168_aae-mir-2b:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 52 tatcacagccagctttgatgagc 74
>35271_aga-mir-2-1:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 58 tatcacagccagctttgatgagc 80
>35340_ame-mir-2-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 54 tatcacagccagctttgatgagc 76
>35341_ame-mir-2-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 50 tatcacagccagctttgatgagc 72
>35515_bmo-mir-2a-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 52 tatcacagccagctttgatgagc 74
>36076_dan-mir-2a-1:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 48 tatcacagccagctttgatgagc 70
>36077_dan-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>36153_der-mir-2a-1:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 49 tatcacagccagctttgatgagc 71
>36154_der-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>36236_dgr-mir-2a-1:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 52 tatcacagccagctttgatgagc 74
>36237_dgr-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>36321_dme-mir-2a-1:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 49 tatcacagccagctttgatgagc 71
>36322_dme-mir-2a-1:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 49 tatcacagccagctttgatgagc 71
>36323_dme-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>36324_dme-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>36752_dmo-mir-2a-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 51 tatcacagccagctttgatgagc 73
>36753_dmo-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>36825_dpe-mir-2a-1:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 47 tatcacagccagctttgatgagc 69
>36826_dpe-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>36900_dps-mir-2a-1:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 47 tatcacagccagctttgatgagc 69
>36901_dps-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>37112_dse-mir-2a-1:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 49 tatcacagccagctttgatgagc 71
>37113_dse-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>37114_dse-mir-2a-3:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>37191_dsi-mir-2a-1:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 49 tatcacagccagctttgatgagc 71
>37192_dsi-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>37328_dvi-mir-2a-1:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 50 tatcacagccagctttgatgagc 72
>37329_dvi-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>37403_dwi-mir-2a-1:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 50 tatcacagccagctttgatgagc 72
>37404_dwi-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>37481_dya-mir-2a-1:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 49 tatcacagccagctttgatgagc 71
>37482_dya-mir-2a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>37687_tca-mir-2a:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 52 tatcacagccagctttgatgagc 74
>37688_tca-mir-2a:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 52 tatcacagccagctttgatgagc 74
>37689_tca-mir-2b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 50 tatcacagccagctttgatgagc 72
>37690_tca-mir-2b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgagc 83
|||||||||||||||||||||||
Sbjct: 50 tatcacagccagctttgatgagc 72
>38848_lgi-mir-2c:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatgag 82
||||||||||||||||||||||
Sbjct: 59 tatcacagccagctttgatgag 80
>38487_crm-mir-2:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 59 tatcacagccagctttgatg 78
>36079_dan-mir-2c:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 57 tatcacagccagctttgatg 76
>36157_der-mir-2c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 63 tatcacagccagctttgatg 82
>36239_dgr-mir-2c:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 61 tatcacagccagctttgatg 80
>36329_dme-mir-2c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 63 tatcacagccagctttgatg 82
>36330_dme-mir-2c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 63 tatcacagccagctttgatg 82
>36755_dmo-mir-2c:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 54 tatcacagccagctttgatg 73
>36828_dpe-mir-2c:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 64 tatcacagccagctttgatg 83
>36904_dps-mir-2c:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 64 tatcacagccagctttgatg 83
>37117_dse-mir-2c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 63 tatcacagccagctttgatg 82
>37195_dsi-mir-2c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 63 tatcacagccagctttgatg 82
>37331_dvi-mir-2c:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 61 tatcacagccagctttgatg 80
>37406_dwi-mir-2c:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 58 tatcacagccagctttgatg 77
>37485_dya-mir-2c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 63 tatcacagccagctttgatg 82
>37632_nvi-mir-2b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 51 tatcacagccagctttgatg 70
>38094_bma-mir-2a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 50 tatcacagccagctttgatg 69
>38267_cel-mir-2:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tatcacagccagctttgatg 80
||||||||||||||||||||
Sbjct: 61 tatcacagccagctttgatg 80
