miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37585_ngi-mir-263b:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 71/76 (93%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 2 aggttctggcgggtcttggcactggaagaattcacagatgtgc---agtgtataatcgtg 58
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 1 aggttctggcgggtcttggcactggaagaattcacagatgtgcggttgtgtgtaatcgtg 60
Query: 59 gatcttgcaatgccat 74
||||||||||||||||
Sbjct: 61 gatcttgcaatgccat 76
>37616_nlo-mir-263b:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 71/76 (93%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 2 aggttctggcgggtcttggcactggaagaattcacagatgtgc---agtgtataatcgtg 58
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 1 aggttctggcgggtcttggcactggaagaattcacagatgtgcggttgtgtgtaatcgtg 60
Query: 59 gatcttgcaatgccat 74
||||||||||||||||
Sbjct: 61 gatcttgcaatgccat 76
>37658_nvi-mir-263b:mirbase
Length = 81
Score = 97.6 bits (49), Expect = 1e-21
Identities = 66/71 (92%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 7 ctggcgggtcttggcactggaagaattcacagatgtgc---agtgtataatcgtggatct 63
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 1 ctggcgggtcttggcactggaagaattcacagatgtgcggttgtgtgtaatcgtggatct 60
Query: 64 tgcaatgccat 74
|||||||||||
Sbjct: 61 tgcaatgccat 71
>37764_tca-mir-263b:mirbase
Length = 75
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 cttggcactggaagaattcacagat 40
|||||||||||||||||||||||||
Sbjct: 10 cttggcactggaagaattcacagat 34
>37763_tca-mir-263b:mirbase
Length = 75
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 cttggcactggaagaattcacagat 40
|||||||||||||||||||||||||
Sbjct: 10 cttggcactggaagaattcacagat 34
>35020_dpu-mir-263b:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 cttggcactggaagaattcacaga 39
||||||||||||||||||||||||
Sbjct: 7 cttggcactggaagaattcacaga 30
>35074_api-mir-263b:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 cttggcactggaagaattcacaga 39
||||||||||||||||||||||||
Sbjct: 1 cttggcactggaagaattcacaga 24
>36192_der-mir-263b:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtcttggcactggaagaattcacag 38
||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactgggagaattcacag 38
>36407_dme-mir-263b:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtcttggcactggaagaattcacag 38
||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactgggagaattcacag 38
>36408_dme-mir-263b:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtcttggcactggaagaattcacag 38
||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactgggagaattcacag 38
>37152_dse-mir-263b:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtcttggcactggaagaattcacag 38
||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactgggagaattcacag 38
>37231_dsi-mir-263b:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtcttggcactggaagaattcacag 38
||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactgggagaattcacag 38
>37520_dya-mir-263b-1:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtcttggcactggaagaattcacag 38
||||||||||||| |||||||||||
Sbjct: 13 gtcttggcactgggagaattcacag 37
>37521_dya-mir-263b-2:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtcttggcactggaagaattcacag 38
||||||||||||| |||||||||||
Sbjct: 13 gtcttggcactgggagaattcacag 37
>36114_dan-mir-263b:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tcttggcactggaagaattcacag 38
|||||||||||| |||||||||||
Sbjct: 14 tcttggcactgggagaattcacag 37
>36281_dgr-mir-263b:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tcttggcactggaagaattcacag 38
|||||||||||| |||||||||||
Sbjct: 8 tcttggcactgggagaattcacag 31
>36866_dpe-mir-263b:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tcttggcactggaagaattcacag 38
|||||||||||| |||||||||||
Sbjct: 15 tcttggcactgggagaattcacag 38
>36945_dps-mir-263b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tcttggcactggaagaattcacag 38
|||||||||||| |||||||||||
Sbjct: 15 tcttggcactgggagaattcacag 38
>37366_dvi-mir-263b:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tcttggcactggaagaattcacag 38
|||||||||||| |||||||||||
Sbjct: 5 tcttggcactgggagaattcacag 28
>37445_dwi-mir-263b:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tcttggcactggaagaattcacag 38
|||||||||||| |||||||||||
Sbjct: 2 tcttggcactgggagaattcacag 25
