miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AADK01019309.1/4596-4529 7091:Bombyx mori
(domestic silkworm)
Length = 68
Score = 135 bits (68), Expect = 9e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 6 cgagagtgcattgtagttgcattgcaccggttccattaacgtgcaatatgactacaaggc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgagagtgcattgtagttgcattgcaccggttccattaacgtgcaatatgactacaaggc 60
Query: 66 aaatcccg 73
||||||||
Sbjct: 61 aaatcccg 68
>RF00667;mir-33;AAZX01017121.1/8029-8095 7425:Nasonia vitripennis
(jewel wasp)
Length = 67
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 cgagagtgcattgtagttgcattgca 31
||||||||||||||||||||||||||
Sbjct: 1 cgagagtgcattgtagttgcattgca 26
>RF00667;mir-33;AABS01001128.1/11040-10976 7719:Ciona intestinalis
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcac 32
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;AACT01006707.1/8663-8725 51511:Ciona savignyi
Length = 63
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcac 32
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;AAPN01422427.1/10575-10641 9258:Ornithorhynchus
anatinus (platypus)
Length = 67
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 agtgcattgtagttgcattgca 31
||||||||||||||||||||||
Sbjct: 5 agtgcattgtagttgcattgca 26
>RF00667;mir-33;AAPN01437665.1/3526-3458 9258:Ornithorhynchus
anatinus (platypus)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcac 32
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;ABQO010273055.1/1298-1232 9315:Macropus eugenii
(tammar wallaby)
Length = 67
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcac 32
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;AAPY01023874.1/2160-2093 37347:Tupaia belangeri
(northern tree shrew)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 agtgcattgtagttgcattgca 31
||||||||||||||||||||||
Sbjct: 5 agtgcattgtagttgcattgca 26
>RF00667;mir-33;AAIY01417522.1/685-752 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcac 32
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;AAWZ01021152.1/40382-40314 28377:Anolis
carolinensis (green anole)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 agtgcattgtagttgcattgca 31
||||||||||||||||||||||
Sbjct: 5 agtgcattgtagttgcattgca 26
>RF00667;mir-33;AADN02006059.1/2390-2322 9031:Gallus gallus
(chicken)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 agtgcattgtagttgcattgca 31
||||||||||||||||||||||
Sbjct: 5 agtgcattgtagttgcattgca 26
>RF00667;mir-33;CAAE01014738.1/1624047-1623979 99883:Tetraodon
nigroviridis
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcac 32
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;CAAB01001000.1/62134-62064 31033:Takifugu rubripes
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcac 32
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;BAAE01264275.1/1544-1477 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 agtgcattgtagttgcattgca 31
||||||||||||||||||||||
Sbjct: 5 agtgcattgtagttgcattgca 26
>RF00667;mir-33;AAWU01038467.1/41288-41214 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcac 32
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;AAGE02018815.1/108790-108863 7159:Aedes aegypti
(yellow fever mosquito)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcac 32
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
>RF00667;mir-33;ABKP02018093.1/235-307 377271:Anopheles gambiae M
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgcattgtagttgcattgcac 32
||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcac 27
