miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 176 bits (89), Expect = 4e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 11 cgttgttcgctttagctggttgacttcgggtcaaattgtcattttcatatcatttggtcc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgttgttcgctttagctggttgacttcgggtcaaattgtcattttcatatcatttggtcc 60
Query: 71 ccttcaaccagctgtagttaacatctgct 99
|||||||||||||||||||||||||||||
Sbjct: 61 ccttcaaccagctgtagttaacatctgct 89
>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
humanus corporis (human body louse)
Length = 90
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 60 tcatttggtccccttcaaccagctgtagtt 89
||||||||||||||||||||||||||||||
Sbjct: 51 tcatttggtccccttcaaccagctgtagtt 80
>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
(honey bee)
Length = 91
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 61 catttggtccccttcaaccagctgtagttaacat 94
||||||||||||||||||||||||||||| ||||
Sbjct: 53 catttggtccccttcaaccagctgtagttgacat 86
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 59 atcatttggtccccttcaaccagctgtag 87
|||||||||||||||||||||||||||||
Sbjct: 67 atcatttggtccccttcaaccagctgtag 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 23 tagctggttgacttcgggtcaaattgtca 51
|||||||||||||||||||||||| ||||
Sbjct: 9 tagctggttgacttcgggtcaaatcgtca 37
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 catttggtccccttcaaccagctgtag 87
|||||||||||||||||||||||||||
Sbjct: 34 catttggtccccttcaaccagctgtag 60
>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 atcatttggtccccttcaaccagctgt 85
|||||||||||||||||||||||||||
Sbjct: 68 atcatttggtccccttcaaccagctgt 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tagctggttgacttcgggtcaaat 46
||||||||||||||||||||||||
Sbjct: 10 tagctggttgacttcgggtcaaat 33
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 catttggtccccttcaaccagctgtag 87
|||||||||||||||||||||||||||
Sbjct: 67 catttggtccccttcaaccagctgtag 93
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 catttggtccccttcaaccagctgtag 87
|||||||||||||||||||||||||||
Sbjct: 54 catttggtccccttcaaccagctgtag 80
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 catttggtccccttcaaccagctgtag 87
|||||||||||||||||||||||||||
Sbjct: 51 catttggtccccttcaaccagctgtag 77
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 catttggtccccttcaaccagctgtag 87
|||||||||||||||||||||||||||
Sbjct: 48 catttggtccccttcaaccagctgtag 74
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 atttggtccccttcaaccagctgtag 87
||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtag 75
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 atttggtccccttcaaccagctgtag 87
||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtag 75
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 atttggtccccttcaaccagctgtag 87
||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtag 75
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 atttggtccccttcaaccagctgtag 87
||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtag 75
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 atttggtccccttcaaccagctgtag 87
||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtag 75
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 atttggtccccttcaaccagctgtag 87
||||||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctgtag 74
>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 atttggtccccttcaaccagctgta 86
|||||||||||||||||||||||||
Sbjct: 51 atttggtccccttcaaccagctgta 75
>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 62 atttggtccccttcaaccagctgtagttaacat 94
|||||||||||||||||||||||| ||| ||||
Sbjct: 47 atttggtccccttcaaccagctgtggttgacat 79
>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
scapularis (black-legged tick)
Length = 107
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 catttggtccccttcaaccagctgt 85
|||||||||||||||||||||||||
Sbjct: 69 catttggtccccttcaaccagctgt 93
>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 atttggtccccttcaaccagctgt 85
||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgt 73
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 atttggtccccttcaaccagctg 84
|||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctg 71
>RF00446;mir-133;ABIR01002879.1/58014-58104 6334:Trichinella
spiralis
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 tatcatttggtccccttcaaccagct 83
||||| ||||||||||||||||||||
Sbjct: 50 tatcaattggtccccttcaaccagct 75
>RF00446;mir-133;AAGJ02035428.1/18887-18799
7668:Strongylocentrotus purpuratus
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 atttggtccccttcaaccagctgtag 87
||||||||||||||||||||| ||||
Sbjct: 52 atttggtccccttcaaccagccgtag 77
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 tttggtccccttcaaccagctg 84
||||||||||||||||||||||
Sbjct: 56 tttggtccccttcaaccagctg 77
