miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;BABH01038078.1/4948-5036 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 2 agccgcgcgtcgtcgagatatgtttgatattcttggttgtttgttttggatcacccggga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agccgcgcgtcgtcgagatatgtttgatattcttggttgtttgttttggatcacccggga 60
Query: 62 atcaaacatattactctacgaccgcggcc 90
|||||||||||||||||||||||||||||
Sbjct: 61 atcaaacatattactctacgaccgcggcc 89
>RF00672;mir-190;AAZO01006982.1/10545-10459 121224:Pediculus
humanus corporis (human body louse)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 gagatatgtttgatattcttggttgttt 43
||||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgttt 41
>RF00672;mir-190;ABLF01005497.1/9822-9738 7029:Acyrthosiphon pisum
(pea aphid)
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 gagatatgtttgatattcttggttgtt 42
|||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgtt 40
>RF00672;mir-190;AADG05004972.1/16510-16597 7460:Apis mellifera
(honey bee)
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 17 agatatgtttgatattcttggttgttt 43
|||||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgttt 41
>RF00672;mir-190;AAGE02010108.1/2181-2091 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 gagatatgtttgatattcttggttgtt 42
|||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgtt 40
>RF00672;mir-190;AAAB01008807.1/2608463-2608553 180454:Anopheles
gambiae str. PEST
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 gagatatgtttgatattcttggttgtt 42
|||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgtt 40
>RF00672;mir-190;AAPU01011510.1/87170-87259 7230:Drosophila
mojavensis
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 gagatatgtttgatattcttggttgtt 42
|||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgtt 40
>RF00672;mir-190;ABJB010542931.1/4708-4623 6945:Ixodes scapularis
(black-legged tick)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 cgagatatgtttgatattcttggttgt 41
|||||||||||||||||||||||||||
Sbjct: 14 cgagatatgtttgatattcttggttgt 40
>RF00672;mir-190;AAGH01005520.1/1141-1230 7240:Drosophila simulans
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 gagatatgtttgatattcttggttgt 41
||||||||||||||||||||||||||
Sbjct: 14 gagatatgtttgatattcttggttgt 39
>RF00672;mir-190;AAJJ01000811.1/4671-4585 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 17 agatatgtttgatattcttggttgtttgttttggatcacccgggaatcaaacatatta 74
||||||||||||||||||||||||| | |||| |||||| ||| ||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgtat-ttttaattcacccaggagtcaaacatatta 71
>RF00672;mir-190;AAZX01003157.1/32919-33003 7425:Nasonia
vitripennis (jewel wasp)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 agatatgtttgatattcttggttgt 41
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
