miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;BABH01000454.1/26338-26435 7091:Bombyx mori
(domestic silkworm)
Length = 98
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 2 atgaagtccaaagcagctgctggccactgcacaagattagtcaagtttatactcttgtgc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgaagtccaaagcagctgctggccactgcacaagattagtcaagtttatactcttgtgc 60
Query: 62 gtgtgacagcggctattgcgggcatttcatt 92
|||||||||||||||||||||||||||||||
Sbjct: 61 gtgtgacagcggctattgcgggcatttcatt 91
>RF00679;mir-210;AADG05000839.1/5125-5031 7460:Apis mellifera
(honey bee)
Length = 95
Score = 75.8 bits (38), Expect = 9e-14
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 14 gcagctgctggccactgcacaagattagtcaagtttatactcttgtgcgtgtgacagcgg 73
|||||||||||||||||||||||||||| || | | ||||||||||||||||||||||
Sbjct: 13 gcagctgctggccactgcacaagattagaca---taagactcttgtgcgtgtgacagcgg 69
Query: 74 ctat 77
||||
Sbjct: 70 ctat 73
>RF00679;mir-210;AANI01015309.1/4850-4756 7244:Drosophila virilis
Length = 95
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/68 (89%), Gaps = 7/68 (10%)
Strand = Plus / Plus
Query: 14 gcagctgctggccactgcacaagattag--tcaagtttatactcttgtgcgtgtgacagc 71
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 13 gcagctgctggccactgcacaagattagactcaag-----actcttgtgcgtgtgacagc 67
Query: 72 ggctattg 79
||||||||
Sbjct: 68 ggctattg 75
>RF00679;mir-210;AAPT01021333.1/33432-33528 7222:Drosophila
grimshawi
Length = 97
Score = 65.9 bits (33), Expect = 8e-11
Identities = 59/66 (89%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 16 agctgctggccactgcacaagattag--tcaagtttatactcttgtgcgtgtgacagcgg 73
|||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattagattcaaa---agactcttgtgcgtgtgacagcgg 71
Query: 74 ctattg 79
||||||
Sbjct: 72 ctattg 77
>RF00679;mir-210;AAGE02019443.1/85298-85204 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 61.9 bits (31), Expect = 1e-09
Identities = 65/75 (86%), Gaps = 6/75 (8%)
Strand = Plus / Plus
Query: 14 gcagctgctggccactgcacaagattagtcaagtttat-actcttgtgcgtgtgacagcg 72
|||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct: 13 gcagctgctgaccactgcacaagattaga-----ttatgactcttgtgcgtgtgacaacg 67
Query: 73 gctattgcgggcatt 87
||||||| |||||||
Sbjct: 68 gctattgtgggcatt 82
>RF00679;mir-210;AAJJ01000173.1/48564-48466 7070:Tribolium
castaneum (red flour beetle)
Length = 99
Score = 60.0 bits (30), Expect = 5e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 14 gcagctgctggccactgcacaagattagtcaagtttatactcttgtgcgtgtgacagcgg 73
||||||||||| | |||||||||||||| | || ||||||||||||||||||||||
Sbjct: 13 gcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcgg 72
Query: 74 ctattg 79
||||||
Sbjct: 73 ctattg 78
>RF00679;mir-210;ABJB010428283.1/1369-1447 6945:Ixodes scapularis
(black-legged tick)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 tcttgtgcgtgtgacagcggctattg 79
||||||||||||||||||||||||||
Sbjct: 42 tcttgtgcgtgtgacagcggctattg 67
>RF00679;mir-210;AAAB01008958.1/106879-106786 180454:Anopheles
gambiae str. PEST
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 gcagctgctggccactgcacaagattag 41
|||||||||| |||||||||||||||||
Sbjct: 13 gcagctgctgaccactgcacaagattag 40
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 52 actcttgtgcgtgtgacagcggctatt 78
|||||||||||||||||| ||||||||
Sbjct: 47 actcttgtgcgtgtgacaacggctatt 73
