miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00706;mir-263;BAAB01106279.1/2818-2907 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 178 bits (90), Expect = 8e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 4 gatccaagcacaggcaatggcactggaagaattcacgggttcagtttatatattcccgtg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatccaagcacaggcaatggcactggaagaattcacgggttcagtttatatattcccgtg 60
Query: 64 atctcttagtggcatcactggtgcaggacg 93
||||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatcactggtgcaggacg 90
>RF00706;mir-263;AAAB01008944.1/325742-325831 180454:Anopheles
gambiae str. PEST
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 19 aatggcactggaagaattcacgggttcagtttatatattcccgtgatctcttagtggcat 78
|||||||||||||||||||||||| | ||| | ||||||||| ||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggatttttttcaacattcccgtgttctcttagtggcat 75
>RF00706;mir-263;AC011065.6/94391-94302 7227:Drosophila
melanogaster (fruit fly)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 19 aatggcactggaagaattcacgggttcagtttatata-ttcccgtgatctcttagtggca 77
|||||||||||||||||||||||| | | ||| |||| ||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggt-aatttttatacaacccgtgatctcttagtggca 74
Query: 78 tc 79
||
Sbjct: 75 tc 76
>RF00706;mir-263;AAZX01007729.1/30973-30881 7425:Nasonia
vitripennis (jewel wasp)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 caatggcactggaagaattcacggg 42
|||||||||||||||||||||||||
Sbjct: 16 caatggcactggaagaattcacggg 40
>RF00706;mir-263;AAWU01014939.1/4076-3988 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 aatggcactggaagaattcacgggt 43
|||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggt 40
>RF00706;mir-263;AAGE02027430.1/4828-4738 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 aatggcactggaagaattcacgggt 43
|||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggt 40
>RF00706;mir-263;ABJB010285488.1/4151-4241 6945:Ixodes scapularis
(black-legged tick)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 caatggcactggaagaattcacggg 42
|||||||||||||||||||||||||
Sbjct: 15 caatggcactggaagaattcacggg 39
>RF00706;mir-263;AADG05003940.1/44836-44746 7460:Apis mellifera
(honey bee)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 aatggcactggaagaattcacggg 42
||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggg 39
>RF00706;mir-263;AADE01000074.1/40884-40796 46245:Drosophila
pseudoobscura pseudoobscura
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 aatggcactggaagaattcacggg 42
||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggg 39
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 58 cccgtgatctcttagtggcatcactggtgcaggac 92
|||||||||||||||||||||| |||||| ||||
Sbjct: 54 cccgtgatctcttagtggcatctatggtgcgggac 88
>RF00706;mir-263;AAPU01010625.1/4665-4753 7230:Drosophila
mojavensis
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 aatggcactggaagaattcacggg 42
||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggg 39
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 cccgtgatctcttagtggcatc 79
||||||||||||||||||||||
Sbjct: 54 cccgtgatctcttagtggcatc 75
>RF00706;mir-263;AAJJ01000157.1/103377-103289 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 aatggcactggaagaattcacggg 42
||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggg 39
