miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35592_bmo-mir-2733a-2:mirbase
Length = 117
Score = 83.8 bits (42), Expect = 2e-17
Identities = 99/119 (83%), Gaps = 13/119 (10%)
Strand = Plus / Plus
Query: 1 tatcactgggtgcatgaagattgtggtacagagatcatcacatcacgccgcc-------g 53
||||||||||||||||| ||||||| || |||||||| |||||||||| ||| |
Sbjct: 3 tatcactgggtgcatgatgattgtgatagagagatcaccacatcacgctgccattacatg 62
Query: 54 tgacatctcttctagctgtctttctctctctaatgcagtcatcatactctgagttgata 112
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 63 tgacatctcttcta------tatctctctctaatgcagtcatcatactctcagttgata 115
>35593_bmo-mir-2733a-3:mirbase
Length = 148
Score = 79.8 bits (40), Expect = 4e-16
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 1 tatcactgggtgcatgaagattgtggtacagagatcatcacatcacgccgcc 52
||||||||||||||||| |||||||||| |||||||||| ||||||||||||
Sbjct: 20 tatcactgggtgcatgatgattgtggtagagagatcatctcatcacgccgcc 71
>35605_bmo-mir-2733j:mirbase
Length = 105
Score = 71.9 bits (36), Expect = 1e-13
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 1 tatcactgggtgcatgaagattgtggtacagagatcatcacatcacgc 48
||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct: 58 tatcactgggtgcatgatgatcgtggtagagagatcatcacatcacgc 105
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 76 tctctctctaatgcagtcatcatactctgagttgata 112
|||||||||||||||||||||||||||| ||||||||
Sbjct: 9 tctctctctaatgcagtcatcatactctcagttgata 45
>35603_bmo-mir-2733h:mirbase
Length = 81
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 78 tctctctaatgcagtcatcatactctgagttgata 112
|||||||||||||||||||||||||||||||||||
Sbjct: 1 tctctctaatgcagtcatcatactctgagttgata 35
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 tatcactgggtgcatgaagattgtggtacagaga 34
|||||||||||| |||| |||||||||| |||||
Sbjct: 48 tatcactgggtgtatgatgattgtggtagagaga 81
>35763_bmo-mir-2851-1:mirbase
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 1 tatcactgggtgcatgaagattgtggtacagagatcatcaca 42
||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 42 tatcactgggtgcatgatgattgtggtacagagattatcaca 1
>35591_bmo-mir-2733a-1:mirbase
Length = 84
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 tatcactgggtgcatgaagattgtggtacagagat 35
||||||||||||||||| |||||||||||||||||
Sbjct: 50 tatcactgggtgcatgatgattgtggtacagagat 84
>35597_bmo-mir-2733d:mirbase
Length = 82
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 tatcactgggtgcatgaagattgtggtacagaga 34
|||||||||||| |||||||||||||||||||||
Sbjct: 49 tatcactgggtgtatgaagattgtggtacagaga 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 77 ctctctctaatgcagtcatcatactctgagttgata 112
|||||| ||||||||||||||||||| ||||||||
Sbjct: 1 ctctctgtaatgcagtcatcatactcacagttgata 36
>35764_bmo-mir-2851-2:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 9e-08
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1 tatcactgggtgcatgaagattgtggtacagagatcatcaca 42
||||||||||||||||| ||||||| || |||||||| ||||
Sbjct: 42 tatcactgggtgcatgatgattgtgatagagagatcaccaca 1
>35595_bmo-mir-2733b-2:mirbase
Length = 129
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 76 tctctctctaatgcagtcatcatactctgagttgata 112
||||||| ||||||||||||||||||| ||||||||
Sbjct: 81 tctctctgtaatgcagtcatcatactcacagttgata 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tatcactgggtgcatgaagattgtggta 28
||||||||||||| ||| ||||||||||
Sbjct: 9 tatcactgggtgcgtgatgattgtggta 36
>35594_bmo-mir-2733b-1:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tatcactgggtgcatgaagattgtggta 28
||||||||||||| ||| ||||||||||
Sbjct: 48 tatcactgggtgcgtgatgattgtggta 75
