miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
gambiae str. PEST
Length = 78
Score = 99.6 bits (50), Expect = 5e-21
Identities = 72/78 (92%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 gtctgttcacatcttaccgggcagcattagatat-tttttaaatacttctaatactgtca 59
|||||||||||||||||||||||||||||||||| || | ||| ||||||||||||||
Sbjct: 1 gtctgttcacatcttaccgggcagcattagatatgttatcggatatttctaatactgtca 60
Query: 60 ggtaaagatgtcgtccga 77
||||||||||||||||||
Sbjct: 61 ggtaaagatgtcgtccga 78
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
Length = 79
Score = 99.6 bits (50), Expect = 5e-21
Identities = 71/77 (92%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 2 tctgttcacatcttaccgggcagcattagata--ttttttaaatacttctaatactgtca 59
||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtca 61
Query: 60 ggtaaagatgtcgtccg 76
|||||||||||||||||
Sbjct: 62 ggtaaagatgtcgtccg 78
>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
corporis (human body louse)
Length = 78
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 3 ctgttcacatcttaccgggcagcattagatattttttaaatacttctaatactgtcaggt 62
||||| |||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct: 3 ctgtttacatcttaccgggcagcattagattgattttaagtaattctaatactgtcaggt 62
Query: 63 aaagatgtc 71
|| ||||||
Sbjct: 63 aatgatgtc 71
>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
willistoni
Length = 80
Score = 79.8 bits (40), Expect = 4e-15
Identities = 69/78 (88%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 2 tctgttcacatcttaccgggcagcattagatatt---ttttaaatacttctaatactgtc 58
||||||||||||||||||||||||||||||| || | || ||| ||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagattttgtactatagatatctctaatactgtc 61
Query: 59 aggtaaagatgtcgtccg 76
||||||||||||||||||
Sbjct: 62 aggtaaagatgtcgtccg 79
>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
(red flour beetle)
Length = 77
Score = 79.8 bits (40), Expect = 4e-15
Identities = 68/75 (90%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 3 ctgttcacatcttaccgggcagcattagat-attttttaaatacttctaatactgtcagg 61
||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct: 3 ctgttaacatcttaccgggcagcattagattacatttta--tacttctaatactgtcagg 60
Query: 62 taaagatgtcgtccg 76
|||||||||| ||||
Sbjct: 61 taaagatgtcctccg 75
>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
bee)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 2 tctgttcacatcttaccgggcagcattagatattttttaaatacttctaatactgtcagg 61
||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagattgaagttga--ccttctaatactgtcagg 59
Query: 62 taaagatgtcgtc 74
|||||||||||||
Sbjct: 60 taaagatgtcgtc 72
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
silkworm)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 46 ttctaatactgtcaggtaaagatgtcgtccg 76
|||||||||||||||||||||||||||||||
Sbjct: 46 ttctaatactgtcaggtaaagatgtcgtccg 76
>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 ttctaatactgtcaggtaaagatgtc 71
||||||||||||||||||||||||||
Sbjct: 43 ttctaatactgtcaggtaaagatgtc 68
>RF00241;mir-8;ABLF01004189.1/21301-21379 7029:Acyrthosiphon pisum
(pea aphid)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 47 tctaatactgtcaggtaaagatgtc 71
|||||||||||||||||| ||||||
Sbjct: 48 tctaatactgtcaggtaatgatgtc 72
