miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37489_dya-mir-6-1:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 5e-11
Identities = 60/68 (88%), Gaps = 5/68 (7%)
Strand = Plus / Plus
Query: 3 gtagagagaatagtggctgtgctgtaagttt----caaa-atctatatcacagtggctgt 57
|||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 2 gtagagggaatagttgctgtgctgtaagttaataacaaatatctatatcacagtggctgt 61
Query: 58 tctttttg 65
||||||||
Sbjct: 62 tctttttg 69
>37121_dse-mir-6-1:mirbase
Length = 71
Score = 58.0 bits (29), Expect = 8e-10
Identities = 59/69 (85%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 2 agtagagagaatagtggctgtgctgtaagttt-----caaaatctatatcacagtggctg 56
||||||| ||||||| ||||||||||||||| | | |||||||||||||||||||
Sbjct: 1 agtagagggaatagttgctgtgctgtaagttaatataccatatctatatcacagtggctg 60
Query: 57 ttctttttg 65
|||||||||
Sbjct: 61 ttctttttg 69
>37199_dsi-mir-6-1:mirbase
Length = 71
Score = 58.0 bits (29), Expect = 8e-10
Identities = 59/69 (85%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 2 agtagagagaatagtggctgtgctgtaagtttcaaaa-----tctatatcacagtggctg 56
||||||| ||||||| |||||||||||||||| | | ||||||||||||||||||
Sbjct: 1 agtagagggaatagttgctgtgctgtaagtttatataccgtatctatatcacagtggctg 60
Query: 57 ttctttttg 65
|||||||||
Sbjct: 61 ttctttttg 69
>36161_der-mir-6-1:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 38 atctatatcacagtggctgttctttttg 65
||||||||||||||||||||||||||||
Sbjct: 42 atctatatcacagtggctgttctttttg 69
>36337_dme-mir-6-1:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 38 atctatatcacagtggctgttctttttg 65
||||||||||||||||||||||||||||
Sbjct: 47 atctatatcacagtggctgttctttttg 74
>36338_dme-mir-6-1:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 38 atctatatcacagtggctgttctttttg 65
||||||||||||||||||||||||||||
Sbjct: 47 atctatatcacagtggctgttctttttg 74
>36246_dgr-mir-6-1:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctatatcacagtggctgttctttttg 65
|||||||||||||||||||||||||||
Sbjct: 42 tctatatcacagtggctgttctttttg 68
>36249_dgr-mir-6-4:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctatatcacagtggctgttctttttg 65
|||||||||||||||||||||||||||
Sbjct: 42 tctatatcacagtggctgttctttttg 68
>36760_dmo-mir-6-2:mirbase
Length = 81
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctatatcacagtggctgttctttttg 65
|||||||||||||||||||||||||||
Sbjct: 51 tctatatcacagtggctgttctttttg 77
>36834_dpe-mir-6-3:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctatatcacagtggctgttctttttg 65
|||||||||||||||||||||||||||
Sbjct: 54 tctatatcacagtggctgttctttttg 80
>36909_dps-mir-6-2:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctatatcacagtggctgttctttttg 65
|||||||||||||||||||||||||||
Sbjct: 54 tctatatcacagtggctgttctttttg 80
>37335_dvi-mir-6-1:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctatatcacagtggctgttctttttg 65
|||||||||||||||||||||||||||
Sbjct: 42 tctatatcacagtggctgttctttttg 68
>37411_dwi-mir-6-2:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctatatcacagtggctgttctttttg 65
|||||||||||||||||||||||||||
Sbjct: 65 tctatatcacagtggctgttctttttg 91
>37490_dya-mir-6-2:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctatatcacagtggctgttctttttg 65
|||||||||||||||||||||||||||
Sbjct: 44 tctatatcacagtggctgttctttttg 70
>36084_dan-mir-6-2:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ctatatcacagtggctgttctttttg 65
||||||||||||||||||||||||||
Sbjct: 55 ctatatcacagtggctgttctttttg 80
>36162_der-mir-6-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ctatatcacagtggctgttctttttg 65
||||||||||||||||||||||||||
Sbjct: 44 ctatatcacagtggctgttctttttg 69
>36247_dgr-mir-6-2:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ctatatcacagtggctgttctttttg 65
||||||||||||||||||||||||||
Sbjct: 50 ctatatcacagtggctgttctttttg 75
>36250_dgr-mir-6-5:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ctatatcacagtggctgttctttttg 65
||||||||||||||||||||||||||
Sbjct: 50 ctatatcacagtggctgttctttttg 75
>36339_dme-mir-6-2:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ctatatcacagtggctgttctttttg 65
||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttg 70
>36340_dme-mir-6-2:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ctatatcacagtggctgttctttttg 65
||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttg 70
>37122_dse-mir-6-2:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ctatatcacagtggctgttctttttg 65
||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttg 70
>37200_dsi-mir-6-2:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ctatatcacagtggctgttctttttg 65
||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttg 70
>36759_dmo-mir-6-1:mirbase
Length = 66
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttctttttg 65
|||||||||||||||||||||||||
Sbjct: 40 tatatcacagtggctgttctttttg 64
>36832_dpe-mir-6-1:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttctttttg 65
|||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttctttttg 67
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 2 agtagagagaatagtggctgtgct 25
||||||||||||||| ||||||||
Sbjct: 1 agtagagagaatagttgctgtgct 24
>36908_dps-mir-6-1:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttctttttg 65
|||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttctttttg 72
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagtagagagaatagtggctgtgct 25
|||||||||||||||| ||||||||
Sbjct: 5 aagtagagagaatagttgctgtgct 29
>36085_dan-mir-6-3:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70
>36163_der-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36248_dgr-mir-6-3:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71
>36251_dgr-mir-6-6:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71
>36341_dme-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36342_dme-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36761_dmo-mir-6-3:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>36833_dpe-mir-6-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36910_dps-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>37123_dse-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>37201_dsi-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>37336_dvi-mir-6-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 atatcacagtggctgttctttttg 65
||||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttctttttg 76
>37337_dvi-mir-6-3:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70
>37410_dwi-mir-6-1:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 atatcacagtggctgttctttttg 65
||||||||||||||||||||||||
Sbjct: 44 atatcacagtggctgttctttttg 67
>37412_dwi-mir-6-3:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>37491_dya-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tatatcacagtggctgttcttttt 64
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
