miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00143;mir-6;AAPP01018770.1/57378-57462 7217:Drosophila
ananassae
Length = 85
Score = 107 bits (54), Expect = 2e-23
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 1 tagccccagggaactgttgctgctgatatattattctcccnnnnnnnnnntcacctatat 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tagccccagggaactgttgctgctgatatattattctcccaaaaaaaaaatcacctatat 60
Query: 61 cacagtggctgttctttttggctg 84
||||||||||||||||||||||||
Sbjct: 61 cacagtggctgttctttttggctg 84
>RF00143;mir-6;AAGH01003023.1/9218-9292 7240:Drosophila simulans
Length = 75
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 54 cctatatcacagtggctgttctttttgg 81
||||||||||||||||||||||||||||
Sbjct: 44 cctatatcacagtggctgttctttttgg 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 ccccagggaactgttgctgctgatatattatt 35
|||||||||||| ||||||||||||||||||
Sbjct: 4 ccccagggaacttctgctgctgatatattatt 35
>RF00143;mir-6;AAQB01006291.1/70967-70870 7260:Drosophila
willistoni
Length = 98
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 ctatatcacagtggctgttctttttgg 81
|||||||||||||||||||||||||||
Sbjct: 68 ctatatcacagtggctgttctttttgg 94
>RF00143;mir-6;AAIZ01001618.1/40125-40208 7234:Drosophila
persimilis
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 ctatatcacagtggctgttctttttgg 81
|||||||||||||||||||||||||||
Sbjct: 54 ctatatcacagtggctgttctttttgg 80
>RF00143;mir-6;AAPT01006453.1/3535-3614 7222:Drosophila grimshawi
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 ctatatcacagtggctgttctttttgg 81
|||||||||||||||||||||||||||
Sbjct: 50 ctatatcacagtggctgttctttttgg 76
>RF00143;mir-6;AAPU01010225.1/182992-182911 7230:Drosophila
mojavensis
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 ctatatcacagtggctgttctttttgg 81
|||||||||||||||||||||||||||
Sbjct: 52 ctatatcacagtggctgttctttttgg 78
>RF00143;mir-6;AAPP01018770.1/57233-57304 7217:Drosophila
ananassae
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 ctatatcacagtggctgttctttttg 80
||||||||||||||||||||||||||
Sbjct: 42 ctatatcacagtggctgttctttttg 67
>RF00143;mir-6;AAST01030396.1/2399-2475 7240:Drosophila simulans
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 ctatatcacagtggctgttctttttg 80
||||||||||||||||||||||||||
Sbjct: 47 ctatatcacagtggctgttctttttg 72
>RF00143;mir-6;AAPT01006453.1/3396-3470 7222:Drosophila grimshawi
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 ctatatcacagtggctgttctttttg 80
||||||||||||||||||||||||||
Sbjct: 45 ctatatcacagtggctgttctttttg 70
>RF00143;mir-6;AANI01014795.1/39694-39769 7244:Drosophila virilis
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 ctatatcacagtggctgttctttttg 80
||||||||||||||||||||||||||
Sbjct: 46 ctatatcacagtggctgttctttttg 71
>RF00143;mir-6;AADE01001895.1/3626-3699 46245:Drosophila
pseudoobscura pseudoobscura
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tatatcacagtggctgttctttttg 80
|||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttctttttg 69
>RF00143;mir-6;AAPU01010225.1/183158-183087 7230:Drosophila
mojavensis
Length = 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tatatcacagtggctgttctttttg 80
|||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttctttttg 67
>RF00143;mir-6;AANI01014795.1/39849-39929 7244:Drosophila virilis
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 atatcacagtggctgttctttttgg 81
|||||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttctttttgg 77
>RF00143;mir-6;AAQB01006291.1/70803-70723 7260:Drosophila
willistoni
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tatatcacagtggctgttcttttt 79
||||||||||||||||||||||||
Sbjct: 52 tatatcacagtggctgttcttttt 75
>RF00143;mir-6;AAEU02000463.1/591532-591454 7245:Drosophila yakuba
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tatatcacagtggctgttcttttt 79
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>RF00143;mir-6;AAQB01006291.1/71126-71052 7260:Drosophila
willistoni
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 atatcacagtggctgttctttttg 80
||||||||||||||||||||||||
Sbjct: 47 atatcacagtggctgttctttttg 70
>RF00143;mir-6;AAPP01018770.1/57538-57612 7217:Drosophila
ananassae
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tatatcacagtggctgttcttttt 79
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>RF00143;mir-6;AAIZ01001618.1/40271-40349 7234:Drosophila
persimilis
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tatatcacagtggctgttcttttt 79
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>RF00143;mir-6;AAPT01020768.1/61474-61396 7222:Drosophila
grimshawi
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tatatcacagtggctgttcttttt 79
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>RF00143;mir-6;AAPU01010225.1/182811-182733 7230:Drosophila
mojavensis
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tatatcacagtggctgttcttttt 79
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>RF00143;mir-6;AANI01014795.1/40023-40100 7244:Drosophila virilis
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tatatcacagtggctgttcttttt 79
||||||||||||||||||||||||
Sbjct: 49 tatatcacagtggctgttcttttt 72
>RF00143;mir-6;AASV01054526.1/876-807 7240:Drosophila simulans
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 atatcacagtggctgttctttt 78
||||||||||||||||||||||
Sbjct: 43 atatcacagtggctgttctttt 64
