miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
grimshawi
Length = 76
Score = 127 bits (64), Expect = 2e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1 ccacgtctaccctgtagatccgaatttgttttatactagttttaaggacaaattcggttc 60
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 1 ccacgtctaccctgtagatccgaatttgttgtacactagctttaaggacaaattcggttc 60
Query: 61 tagagaggtttgtgtg 76
||||||||||||||||
Sbjct: 61 tagagaggtttgtgtg 76
>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
willistoni
Length = 79
Score = 123 bits (62), Expect = 3e-28
Identities = 69/70 (98%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactag-ttttaaggacaaattcggttct 61
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
Query: 62 agagaggttt 71
||||||||||
Sbjct: 63 agagaggttt 72
>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
mojavensis
Length = 78
Score = 105 bits (53), Expect = 8e-23
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 ccacgtctaccctgtagatccgaatttgttttatactagttttaaggacaaattcggttc 60
|||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 1 ccacgtctaccctgtagatccgaatttgttgtaccatagctttaaggacaaattcggttc 60
Query: 61 tagagaggtttgtgtgg 77
||||||||||| |||||
Sbjct: 61 tagagaggtttatgtgg 77
>RF00104;mir-10;ABKQ02021837.1/5843-5769 377270:Anopheles gambiae
S
Length = 75
Score = 63.9 bits (32), Expect = 3e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgttttatactagttttaaggacaaattcggttctagagagg 68
||||||||||||||||||||||| | || | |||| |||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtttgaattta-tattaataacaaattcggttctagagagg 67
Query: 69 tttgtgtg 76
||||||||
Sbjct: 68 tttgtgtg 75
>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
castaneum (red flour beetle)
Length = 71
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 47 gacaaattcggttctagagaggtttgtgtg 76
||||||||||||||||||||||||||||||
Sbjct: 42 gacaaattcggttctagagaggtttgtgtg 71
>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
(black-legged tick)
Length = 71
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 48 acaaattcggttctagagaggtttgtgtg 76
|||||||||||||||||||||||||||||
Sbjct: 43 acaaattcggttctagagaggtttgtgtg 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tctaccctgtagatccgaatttgt 29
||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgt 29
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
purpuratus
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgt 29
|||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgt 29
>RF00104;mir-10;CAAB01000183.1/83579-83654 31033:Takifugu rubripes
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgt 29
|||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgt 29
>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgt 29
|||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgt 29
>RF00104;mir-10;EF594314.1/41875-41950 8153:Haplochromis burtoni
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgt 29
|||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgt 29
