miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37500_dya-mir-13a:mirbase
Length = 75
Score = 117 bits (59), Expect = 1e-27
Identities = 72/75 (96%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggttgtgaaatgtcgcctattatctactcatatcacagccatt 60
Query: 60 ttgatgagtttcgtg 74
|||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75
>36172_der-mir-13a:mirbase
Length = 75
Score = 109 bits (55), Expect = 3e-25
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
Query: 60 ttgatgagtttcgtg 74
|||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75
>36359_dme-mir-13a:mirbase
Length = 75
Score = 109 bits (55), Expect = 3e-25
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
Query: 60 ttgatgagtttcgtg 74
|||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75
>36360_dme-mir-13a:mirbase
Length = 75
Score = 109 bits (55), Expect = 3e-25
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
Query: 60 ttgatgagtttcgtg 74
|||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75
>37132_dse-mir-13a:mirbase
Length = 75
Score = 109 bits (55), Expect = 3e-25
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
Query: 60 ttgatgagtttcgtg 74
|||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75
>37208_dsi-mir-13a:mirbase
Length = 75
Score = 109 bits (55), Expect = 3e-25
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
Query: 60 ttgatgagtttcgtg 74
|||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75
>36770_dmo-mir-13a:mirbase
Length = 74
Score = 95.6 bits (48), Expect = 4e-21
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 3 cgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattttg 62
|||||||| |||| ||| |||||||||| ||||||||| | |||||||||||||||||||
Sbjct: 3 cgtaactcttcaaggggttgtgaaatgtagccattatcaagtcatatcacagccattttg 62
Query: 63 atgagtttcgtg 74
||||||||||||
Sbjct: 63 atgagtttcgtg 74
>37346_dvi-mir-13a:mirbase
Length = 74
Score = 95.6 bits (48), Expect = 4e-21
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 3 cgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattttg 62
|||||||| |||| ||| |||||||||||||| ||||| | |||||||||||||||||||
Sbjct: 3 cgtaactcttcaaggggttgtgaaatgttgccgttatcaagtcatatcacagccattttg 62
Query: 63 atgagtttcgtg 74
||||||||||||
Sbjct: 63 atgagtttcgtg 74
>36843_dpe-mir-13a:mirbase
Length = 74
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattt 60
|||||||| | ||||| || ||||||||||||| ||||| | |||||||||||||||||
Sbjct: 1 tacgtaacccatcaaacggttgtgaaatgttgcatttatcaaatcatatcacagccattt 60
Query: 61 tgatgagtttcgtg 74
||||||||||||||
Sbjct: 61 tgatgagtttcgtg 74
>36919_dps-mir-13a:mirbase
Length = 74
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattt 60
|||||||| | ||||| || ||||||||||||| ||||| | |||||||||||||||||
Sbjct: 1 tacgtaacccatcaaacggttgtgaaatgttgcatttatcaaatcatatcacagccattt 60
Query: 61 tgatgagtttcgtg 74
||||||||||||||
Sbjct: 61 tgatgagtttcgtg 74
>36260_dgr-mir-13a:mirbase
Length = 74
Score = 79.8 bits (40), Expect = 2e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 3 cgtaactcctcaaagggctgtgaaatgttgccattatctactcatatcacagccattttg 62
|||||||| |||| ||| |||||||||| | |||||| | |||||||||||||||||||
Sbjct: 3 cgtaactcttcaaggggttgtgaaatgtgggtattatcaagtcatatcacagccattttg 62
Query: 63 atgagtttcgtg 74
||||||||||||
Sbjct: 63 atgagtttcgtg 74
>37423_dwi-mir-13a:mirbase
Length = 78
Score = 71.9 bits (36), Expect = 6e-14
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggct-gtgaaatgttgccattatct---actcatatcacagcc 56
|||||||||| |||| ||| | |||||||||||||||| | | |||||||||||||||
Sbjct: 1 tacgtaactcttcaagggggttgtgaaatgttgccattttattcaactcatatcacagcc 60
Query: 57 attttgatgagtttcgtg 74
||||||||||||||||||
Sbjct: 61 attttgatgagtttcgtg 78
>35352_ame-mir-13a:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgag 67
||||||||||||||||||||||||
Sbjct: 61 tcatatcacagccattttgatgag 84
>36845_dpe-mir-13b-2:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 43 ctcatatcacagccattttgatgagttt 70
||||||||||||||||||||| ||||||
Sbjct: 39 ctcatatcacagccattttgacgagttt 66
>36921_dps-mir-13b-2:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 43 ctcatatcacagccattttgatgagttt 70
||||||||||||||||||||| ||||||
Sbjct: 41 ctcatatcacagccattttgacgagttt 68
>37424_dwi-mir-13b-1:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 8e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 39 tctactcatatcacagccattttgatgagttt 70
|||| |||||||||||||||||||| ||||||
Sbjct: 38 tctattcatatcacagccattttgacgagttt 69
>35281_aga-mir-13b:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 53 tcatatcacagccattttgacgagttt 79
>36011_cqu-mir-13:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 52 tcatatcacagccattttgacgagttt 78
>36095_dan-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36096_dan-mir-13b-2:mirbase
Length = 66
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 39 tcatatcacagccattttgacgagttt 65
>36173_der-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36174_der-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36261_dgr-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36262_dgr-mir-13b-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72
>36361_dme-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36362_dme-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36363_dme-mir-13b-2:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>36364_dme-mir-13b-2:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>36771_dmo-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36772_dmo-mir-13b-2:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36844_dpe-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36920_dps-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37133_dse-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37134_dse-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37209_dsi-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37210_dsi-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37347_dvi-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37348_dvi-mir-13b-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72
>37501_dya-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37502_dya-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagttt 70
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37572_ngi-mir-13a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccattttgatgag 67
|||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71
>37606_nlo-mir-13a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccattttgatgag 67
|||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71
>37639_nvi-mir-13a:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccattttgatgag 67
|||||||||||||||||||||||
Sbjct: 65 catatcacagccattttgatgag 87
>35180_aae-mir-13:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagtt 69
|||||||||||||||||||| |||||
Sbjct: 51 tcatatcacagccattttgacgagtt 76
>37425_dwi-mir-13b-2:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgagtt 69
|||||||||||||||||||| |||||
Sbjct: 41 tcatatcacagccattttgacgagtt 66
>35051_api-mir-13a:mirbase
Length = 61
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 44 tcatatcacagccattttgatgag 67
|||||||||||||| |||||||||
Sbjct: 37 tcatatcacagccactttgatgag 60
>37713_tca-mir-13b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 tatcacagccattttgatgagttt 70
||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69
>37714_tca-mir-13b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 tatcacagccattttgatgagttt 70
||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69
>35527_bmo-mir-13b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 ctcatatcacagccatttt 61
|||||||||||||||||||
Sbjct: 44 ctcatatcacagccatttt 62
