miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37506_dya-mir-33:mirbase
Length = 90
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 3 gagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttgctccaggcaataca 62
||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 3 gagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
Query: 63 actgcagtgcaagctctgtgcatttcac 90
||| ||||||||||||||||||||||||
Sbjct: 63 acttcagtgcaagctctgtgcatttcac 90
>37138_dse-mir-33:mirbase
Length = 90
Score = 139 bits (70), Expect = 4e-34
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 1 cggagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttgctccaggcaata 60
|||||||| |||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1 cggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaata 60
Query: 61 caactgcagtgcaagctctgtgcatttcac 90
||||| ||||||||||||||||||||||||
Sbjct: 61 caacttcagtgcaagctctgtgcatttcac 90
>37214_dsi-mir-33:mirbase
Length = 90
Score = 139 bits (70), Expect = 4e-34
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 1 cggagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttgctccaggcaata 60
|||||||| |||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1 cggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaata 60
Query: 61 caactgcagtgcaagctctgtgcatttcac 90
||||| ||||||||||||||||||||||||
Sbjct: 61 caacttcagtgcaagctctgtgcatttcac 90
>36371_dme-mir-33:mirbase
Length = 99
Score = 137 bits (69), Expect = 1e-33
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 2 ggagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttgctccaggcaatac 61
||||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 11 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatac 70
Query: 62 aactgcagtgcaagctctgtgcatttcac 90
|||| ||||||||||||||||||||||||
Sbjct: 71 aacttcagtgcaagctctgtgcatttcac 99
>36372_dme-mir-33:mirbase
Length = 99
Score = 137 bits (69), Expect = 1e-33
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 2 ggagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttgctccaggcaatac 61
||||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 11 ggagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaatac 70
Query: 62 aactgcagtgcaagctctgtgcatttcac 90
|||| ||||||||||||||||||||||||
Sbjct: 71 aacttcagtgcaagctctgtgcatttcac 99
>36178_der-mir-33:mirbase
Length = 90
Score = 135 bits (68), Expect = 6e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 3 gagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttgctccaggcaataca 62
|||||| |||| |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 3 gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
Query: 63 actgcagtgcaagctctgtgcatttcac 90
||| ||||||||||||||||||||||||
Sbjct: 63 acttcagtgcaagctctgtgcatttcac 90
>36849_dpe-mir-33:mirbase
Length = 90
Score = 123 bits (62), Expect = 2e-29
Identities = 84/90 (93%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 cggagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttg-ctccaggcaat 59
|||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 1 cggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaat 60
Query: 60 acaactgcagtgcaagctctgtgcatttca 89
||||||||||||||||||||||||||||||
Sbjct: 61 acaactgcagtgcaagctctgtgcatttca 90
>36925_dps-mir-33:mirbase
Length = 91
Score = 115 bits (58), Expect = 5e-27
Identities = 83/90 (92%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 cggagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttg-ctccaggcaat 59
|||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 2 cggagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaat 61
Query: 60 acaactgcagtgcaagctctgtgcatttca 89
||||||||| ||||||||||||||||||||
Sbjct: 62 acaactgcaatgcaagctctgtgcatttca 91
>36266_dgr-mir-33:mirbase
Length = 92
Score = 79.8 bits (40), Expect = 3e-16
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 2 ggagatgtcacgcaggtgcattgtagtcgcattgtctgtcc--cacttgctccaggcaat 59
|||| ||||||| |||||||||||||||||||||||||||| | |||| ||||||
Sbjct: 2 ggagctgtcacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaat 61
Query: 60 acaactgcagtgcaagctctgtgcatttcac 90
||||||||||||||||||| ||||| |||||
Sbjct: 62 acaactgcagtgcaagctccgtgcagttcac 92
>37352_dvi-mir-33:mirbase
Length = 92
Score = 79.8 bits (40), Expect = 3e-16
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 2 ggagatgtcacgcaggtgcattgtagtcgcattgtctgtcccac--ttgctccaggcaat 59
|||| ||| ||| ||||||||||||||||||||||||||| || |||| | ||||||
Sbjct: 2 ggagctgttacggaggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaat 61
Query: 60 acaactgcagtgcaagctctgtgcatttcac 90
||||||||||||||||||| ||||| |||||
Sbjct: 62 acaactgcagtgcaagctccgtgcagttcac 92
>36776_dmo-mir-33:mirbase
Length = 93
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 54 ggcaatacaactgcagtgcaagctctgtgcatttcac 90
||||||||||||||||||||||||| ||||| |||||
Sbjct: 57 ggcaatacaactgcagtgcaagctccgtgcagttcac 93
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 2 ggagatgtcacgcaggtgcattgtagtcgcattgtctgt 40
|||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 2 ggagctgtgacggaggtgcattgtagtcgcattgtctgt 40
>37429_dwi-mir-33:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 10 cacgcaggtgcattgtagtcgcattgtctgt 40
|||| ||||||||||||||||||||||||||
Sbjct: 8 cacgaaggtgcattgtagtcgcattgtctgt 38
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 caggcaatacaactgcagtgcaagct 77
||||||||||||||||||||||||||
Sbjct: 71 caggcaatacaactgcagtgcaagct 96
