miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36373_dme-mir-34:mirbase
Length = 99
Score = 93.7 bits (47), Expect = 2e-20
Identities = 89/101 (88%), Gaps = 9/101 (8%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc----tggtgctcgttggca 56
||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |
Sbjct: 4 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgc-cgttgac- 61
Query: 57 attaattcacagccactatcttcactgccgccgcgacaagc 97
||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ---aattcacagccactatcttcactgccgccgcgacaagc 99
>36374_dme-mir-34:mirbase
Length = 99
Score = 93.7 bits (47), Expect = 2e-20
Identities = 89/101 (88%), Gaps = 9/101 (8%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc----tggtgctcgttggca 56
||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |
Sbjct: 4 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgc-cgttgac- 61
Query: 57 attaattcacagccactatcttcactgccgccgcgacaagc 97
||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ---aattcacagccactatcttcactgccgccgcgacaagc 99
>37139_dse-mir-34:mirbase
Length = 96
Score = 93.7 bits (47), Expect = 2e-20
Identities = 89/101 (88%), Gaps = 9/101 (8%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc----tggtgctcgttggca 56
||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgc-cgttgac- 58
Query: 57 attaattcacagccactatcttcactgccgccgcgacaagc 97
||||||||||||||||||||||||||||||||||||||
Sbjct: 59 ---aattcacagccactatcttcactgccgccgcgacaagc 96
>37215_dsi-mir-34:mirbase
Length = 96
Score = 93.7 bits (47), Expect = 2e-20
Identities = 89/101 (88%), Gaps = 9/101 (8%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc----tggtgctcgttggca 56
||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgc-cgttgac- 58
Query: 57 attaattcacagccactatcttcactgccgccgcgacaagc 97
||||||||||||||||||||||||||||||||||||||
Sbjct: 59 ---aattcacagccactatcttcactgccgccgcgacaagc 96
>37507_dya-mir-34:mirbase
Length = 96
Score = 93.7 bits (47), Expect = 2e-20
Identities = 89/101 (88%), Gaps = 9/101 (8%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc----tggtgctcgttggca 56
||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgc-cgttgac- 58
Query: 57 attaattcacagccactatcttcactgccgccgcgacaagc 97
||||||||||||||||||||||||||||||||||||||
Sbjct: 59 ---aattcacagccactatcttcactgccgccgcgacaagc 96
>36179_der-mir-34:mirbase
Length = 96
Score = 81.8 bits (41), Expect = 8e-17
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc 41
>36850_dpe-mir-34:mirbase
Length = 97
Score = 81.8 bits (41), Expect = 8e-17
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc 41
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 61 attcacagccactatcttcactgccgccgcgacaagc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcacagccactatcttcactgccgccgcgacaagc 97
>36926_dps-mir-34:mirbase
Length = 100
Score = 81.8 bits (41), Expect = 8e-17
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tggctatgcgctttggcagtgtggttagctggttgtgtagc 44
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 61 attcacagccactatcttcactgccgccgcgacaagc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 64 attcacagccactatcttcactgccgccgcgacaagc 100
>37430_dwi-mir-34:mirbase
Length = 100
Score = 81.8 bits (41), Expect = 8e-17
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagc 41
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 64 cacagccactatcttcactgccgccgcgaca 94
|||||||||||||||||||||||||||||||
Sbjct: 67 cacagccactatcttcactgccgccgcgaca 97
>36267_dgr-mir-34:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgt 38
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 63 tcacagccactatcttcactgccgccgcgacaagc 97
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcacagccactatcttcactgccgccgcgacaagc 87
>36777_dmo-mir-34:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgt 38
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 63 tcacagccactatcttcactgccgccgcgacaagc 97
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcacagccactatcttcactgccgccgcgacaagc 87
>37353_dvi-mir-34:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgt 38
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 63 tcacagccactatcttcactgccgccgcgacaagc 97
|||||||||||||||||||||||||||||||||||
Sbjct: 53 tcacagccactatcttcactgccgccgcgacaagc 87
>37645_nvi-mir-34:mirbase
Length = 99
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgtagct 42
||||||||||||||||||||||||||||||
Sbjct: 20 ttggcagtgtggttagctggttgtgtagct 49
>35184_aae-mir-34:mirbase
Length = 129
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 cgctttggcagtgtggttagctggttgtgtag 40
|||| |||||||||||||||||||||||||||
Sbjct: 11 cgctatggcagtgtggttagctggttgtgtag 42
>37576_ngi-mir-34:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgtag 40
||||||||||||||||||||||||||||
Sbjct: 7 ttggcagtgtggttagctggttgtgtag 34
>37608_nlo-mir-34:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgtag 40
||||||||||||||||||||||||||||
Sbjct: 7 ttggcagtgtggttagctggttgtgtag 34
>35531_bmo-mir-34:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgta 39
|||||||||||||||||||||||||||
Sbjct: 20 ttggcagtgtggttagctggttgtgta 46
>35283_aga-mir-34:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 cgctttggcagtgtggttagctggttgtgt 38
|||| |||||||||||||||||||||||||
Sbjct: 12 cgctctggcagtgtggttagctggttgtgt 41
>35005_dpu-mir-34:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtg 37
|||||||||||||||||||||||||
Sbjct: 21 ttggcagtgtggttagctggttgtg 45
>37723_tca-mir-34:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgtgt 38
|||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35
>37724_tca-mir-34:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgtgt 38
|||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35
>38739_cte-mir-34:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgtg 37
||||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgtg 45
>34870_sko-mir-34:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgt 36
|||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgt 44
>38100_bma-mir-34:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgt 36
|||||||||||||||||||||||
Sbjct: 23 tggcagtgtggttagctggttgt 45
>35054_api-mir-34:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgtgta 39
|||||||||| |||||||||||||||
Sbjct: 1 tggcagtgtgattagctggttgtgta 26
>35358_ame-mir-34:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgt 38
|||||||||| |||||||||||||||
Sbjct: 20 ttggcagtgttgttagctggttgtgt 45
>38488_crm-mir-34:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ggcagtgtggttagctggttg 35
|||||||||||||||||||||
Sbjct: 16 ggcagtgtggttagctggttg 36
>38127_cbr-mir-34:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ggcagtgtggttagctggttg 35
|||||||||||||||||||||
Sbjct: 19 ggcagtgtggttagctggttg 39
>38268_cel-mir-34:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ggcagtgtggttagctggttg 35
|||||||||||||||||||||
Sbjct: 17 ggcagtgtggttagctggttg 37
>38858_lgi-mir-34:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggt 33
||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggt 41
