miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;AABU01002774.1/17891638-17891716 7227:Drosophila
melanogaster (fruit fly)
Length = 79
Score = 101 bits (51), Expect = 1e-21
Identities = 73/79 (92%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 6 aatttcccgtaggacgggaaggtgtcaaggttttgaattaa-attaaacattgcacttgt 64
|||||||||||||||||||||||||||| |||||| ||| | ||||||||||||||||
Sbjct: 1 aatttcccgtaggacgggaaggtgtcaacgttttgcatttcgaataaacattgcacttgt 60
Query: 65 cccggcctatgggcggttt 83
|||||||||||||||||||
Sbjct: 61 cccggcctatgggcggttt 79
>RF00464;mir-92;AASS01038642.1/1728-1802 7240:Drosophila simulans
Length = 75
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 51 aacattgcacttgtcccggcctatgggcggtt 82
||||||||||||||||||||||||||||||||
Sbjct: 43 aacattgcacttgtcccggcctatgggcggtt 74
>RF00464;mir-92;AAPU01011126.1/203266-203187 7230:Drosophila
mojavensis
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 50 aaacattgcacttgtcccggcctatgggcggttt 83
|||||||||||||||||||||||||| |||||||
Sbjct: 47 aaacattgcacttgtcccggcctatgagcggttt 80
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 attgcacttgtcccggcctatgg 76
|||||||||||||||||||||||
Sbjct: 53 attgcacttgtcccggcctatgg 75
>RF00464;mir-92;AAWU01030066.1/31253-31174 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 attgcacttgtcccggcctatg 75
||||||||||||||||||||||
Sbjct: 51 attgcacttgtcccggcctatg 72
>RF00464;mir-92;AAGE02006821.1/67754-67834 7159:Aedes aegypti
(yellow fever mosquito)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 attgcacttgtcccggcctatg 75
||||||||||||||||||||||
Sbjct: 52 attgcacttgtcccggcctatg 73
>RF00464;mir-92;AAAB01007923.1/22644-22568 180454:Anopheles
gambiae str. PEST
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 attgcacttgtcccggcctatg 75
||||||||||||||||||||||
Sbjct: 48 attgcacttgtcccggcctatg 69
