miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;AANI01015309.1/4850-4756 7244:Drosophila virilis
Length = 95
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 2 cggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgt 61
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 cggtacttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgt 61
Query: 62 gacagcggctattgtaagag 81
||||||||||||||||||||
Sbjct: 62 gacagcggctattgtaagag 81
>RF00679;mir-210;AADG05000839.1/5125-5031 7460:Apis mellifera
(honey bee)
Length = 95
Score = 115 bits (58), Expect = 9e-26
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 71
Query: 72 at 73
||
Sbjct: 72 at 73
>RF00679;mir-210;AAPT01021333.1/33432-33528 7222:Drosophila
grimshawi
Length = 97
Score = 109 bits (55), Expect = 6e-24
Identities = 73/78 (93%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 gcttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtga 63
|||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 6 gcttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtga 65
Query: 64 cagcggctattgtaagag 81
||||||||||||||||||
Sbjct: 66 cagcggctattgtaagag 83
>RF00679;mir-210;AAGE02019443.1/85298-85204 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 93.7 bits (47), Expect = 3e-19
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 10 attgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcgg 69
||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 10 attgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacgg 68
Query: 70 ctattgt 76
|||||||
Sbjct: 69 ctattgt 75
>RF00679;mir-210;BABH01000454.1/26338-26435 7091:Bombyx mori
(domestic silkworm)
Length = 98
Score = 79.8 bits (40), Expect = 5e-15
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 13 gcagctgctggccactgcacaagattag---acttaagactcttgtgcgtgtgacagcgg 69
|||||||||||||||||||||||||||| | || | ||||||||||||||||||||||
Sbjct: 13 gcagctgctggccactgcacaagattagtcaagtttatactcttgtgcgtgtgacagcgg 72
Query: 70 ctattg 75
||||||
Sbjct: 73 ctattg 78
>RF00679;mir-210;AAAB01008958.1/106879-106786 180454:Anopheles
gambiae str. PEST
Length = 94
Score = 73.8 bits (37), Expect = 3e-13
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 10 attgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcgg 69
||||||||||||| |||||||||||||||||| | ||||||||||||||||||| |||
Sbjct: 10 attgcagctgctgaccactgcacaagattaga-atgcgactcttgtgcgtgtgacaacgg 68
Query: 70 ctatt 74
|||||
Sbjct: 69 ctatt 73
>RF00679;mir-210;AAJJ01000173.1/48564-48466 7070:Tribolium
castaneum (red flour beetle)
Length = 99
Score = 67.9 bits (34), Expect = 2e-11
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 68
|||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 12 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 71
Query: 69 gctattgt 76
||||||||
Sbjct: 72 gctattgt 79
>RF00679;mir-210;ABJB010428283.1/1369-1447 6945:Ixodes scapularis
(black-legged tick)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tcttgtgcgtgtgacagcggctattg 75
||||||||||||||||||||||||||
Sbjct: 42 tcttgtgcgtgtgacagcggctattg 67
>RF00679;mir-210;AAZO01006118.1/235-143 121224:Pediculus humanus
corporis (human body louse)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 13 gcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
||||||||||| ||| || ||||||||| ||||||||||||||||||
Sbjct: 13 gcagctgctggacacagcccaagattagt-ttaagactcttgtgcgtg 59
