miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36405_dme-mir-263a:mirbase
Length = 94
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtga 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4 atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtga 63
Query: 61 tctcttagtggcatctatggtgcg 84
||||||||||||||||||||||||
Sbjct: 64 tctcttagtggcatctatggtgcg 87
>36406_dme-mir-263a:mirbase
Length = 94
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtga 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4 atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtga 63
Query: 61 tctcttagtggcatctatggtgcg 84
||||||||||||||||||||||||
Sbjct: 64 tctcttagtggcatctatggtgcg 87
>37230_dsi-mir-263a:mirbase
Length = 90
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtga 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtga 61
Query: 61 tctcttagtggcatctatggtgcg 84
||||||||||||||||||||||||
Sbjct: 62 tctcttagtggcatctatggtgcg 85
>37151_dse-mir-263a:mirbase
Length = 90
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtga 60
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2 atctcgacacagttaatggcactggaagaattcacggggtaatttttatacaacccgtga 61
Query: 61 tctcttagtggcatctatggtgcg 84
||||||||||||||||||||||||
Sbjct: 62 tctcttagtggcatctatggtgcg 85
>37519_dya-mir-263a:mirbase
Length = 90
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtga 60
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtga 61
Query: 61 tctcttagtggcatctatggtgcg 84
||||||||||||||||||||||||
Sbjct: 62 tctcttagtggcatctatggtgcg 85
>36191_der-mir-263a:mirbase
Length = 90
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtga 60
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtga 61
Query: 61 tctcttagtggcatctatggtgcg 84
||||||||||||||||||||||||
Sbjct: 62 tctcttagtggcatctatggtgcg 85
>36865_dpe-mir-263a:mirbase
Length = 89
Score = 133 bits (67), Expect = 2e-32
Identities = 80/83 (96%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 5 cggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtgatctc 64
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 6 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 64
Query: 65 ttagtggcatctatggtgcggga 87
|||||||||||||||||||||||
Sbjct: 65 ttagtggcatctatggtgcggga 87
>36944_dps-mir-263a:mirbase
Length = 92
Score = 133 bits (67), Expect = 2e-32
Identities = 80/83 (96%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 5 cggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtgatctc 64
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 7 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 65
Query: 65 ttagtggcatctatggtgcggga 87
|||||||||||||||||||||||
Sbjct: 66 ttagtggcatctatggtgcggga 88
>37105_dps-mir-3983:mirbase
Length = 88
Score = 133 bits (67), Expect = 2e-32
Identities = 80/83 (96%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 5 cggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtgatctc 64
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 83 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 25
Query: 65 ttagtggcatctatggtgcggga 87
|||||||||||||||||||||||
Sbjct: 24 ttagtggcatctatggtgcggga 2
>36280_dgr-mir-263a:mirbase
Length = 89
Score = 119 bits (60), Expect = 4e-28
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtga 60
|||||||||||||||||||||||||||||||||||||||| |||| | || |||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggttattttaacac-gcccgtga 59
Query: 61 tctcttagtggcatctatggtgcgggat 88
||||||||||||||||||||||||||||
Sbjct: 60 tctcttagtggcatctatggtgcgggat 87
>37444_dwi-mir-263a:mirbase
Length = 91
Score = 115 bits (58), Expect = 5e-27
Identities = 83/90 (92%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctataca-acccgtg 59
|||||||||||||||||||||||||||||||||||||||| || | ||| |||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
Query: 60 atctcttagtggcatctatggtgcgggatt 89
||||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcgggatt 90
>36789_dmo-mir-263a:mirbase
Length = 89
Score = 113 bits (57), Expect = 2e-26
Identities = 84/89 (94%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctataca-acccgtg 59
|||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggt-ttttcta-acacgcccgtg 58
Query: 60 atctcttagtggcatctatggtgcgggat 88
|||||||||||||||||||||||||||||
Sbjct: 59 atctcttagtggcatctatggtgcgggat 87
>37365_dvi-mir-263a:mirbase
Length = 89
Score = 105 bits (53), Expect = 5e-24
Identities = 83/89 (93%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctataca-acccgtg 59
|||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggt-ttttata-acacgcccgtg 58
Query: 60 atctcttagtggcatctatggtgcgggat 88
|||||||||||||||||||||||||||||
Sbjct: 59 atctcttagtggcatctatggtgcgggat 87
>34978_isc-mir-263a:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggt 40
||||||||||||||||||||||||||
Sbjct: 21 aatggcactggaagaattcacggggt 46
>35545_bmo-mir-263a:mirbase
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggt-aatttctatacaacccgtgatctcttagtggca 73
|||||||||||||||||||||||| | | ||| |||| ||||||||||||||||||||
Sbjct: 19 aatggcactggaagaattcacgggttcagtttatata-ttcccgtgatctcttagtggca 77
Query: 74 tc 75
||
Sbjct: 78 tc 79
>37761_tca-mir-263a:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggt 40
||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggt 43
>37762_tca-mir-263a:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggt 40
||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggt 43
>35202_aae-mir-263a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggg 38
|||||||||||||||||||||||||
Sbjct: 13 taatggcactggaagaattcacggg 37
>35297_aga-mir-263:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggg 38
|||||||||||||||||||||||||
Sbjct: 13 taatggcactggaagaattcacggg 37
>35377_ame-mir-263:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacgggg 39
|||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40
>36030_cqu-mir-263:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggg 38
|||||||||||||||||||||||||
Sbjct: 8 taatggcactggaagaattcacggg 32
>35019_dpu-mir-263a:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggg 38
||||||||||||||||||||||||
Sbjct: 20 aatggcactggaagaattcacggg 43
>35073_api-mir-263a:mirbase
Length = 66
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggta 41
|||||||||| ||||||||||||||||
Sbjct: 1 aatggcactgaaagaattcacggggta 27
>38872_lgi-mir-183:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 acagttaatggcactggaagaattcacggggtaa 42
||||| ||||||||||| ||||||||||| ||||
Sbjct: 15 acagtgaatggcactggtagaattcacggtgtaa 48
