miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00706;mir-263;AC011065.6/94391-94302 7227:Drosophila
          melanogaster (fruit fly)
          Length = 90

 Score =  159 bits (80), Expect = 7e-39
 Identities = 83/84 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtga 60
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2  atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtga 61

                                  
Query: 61 tctcttagtggcatctatggtgcg 84
          ||||||||||||||||||||||||
Sbjct: 62 tctcttagtggcatctatggtgcg 85




>RF00706;mir-263;AADE01000074.1/40884-40796 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 89

 Score =  133 bits (67), Expect = 4e-31
 Identities = 80/83 (96%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  cggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtgatctc 64
          ||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||
Sbjct: 6  cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 64

                                 
Query: 65 ttagtggcatctatggtgcggga 87
          |||||||||||||||||||||||
Sbjct: 65 ttagtggcatctatggtgcggga 87




>RF00706;mir-263;AAPU01010625.1/4665-4753 7230:Drosophila
          mojavensis
          Length = 89

 Score =  113 bits (57), Expect = 4e-25
 Identities = 84/89 (94%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacggggtaatttctataca-acccgtg 59
          ||||||||||||||||||||||||||||||||||||||||  |||||| |||  ||||||
Sbjct: 2  atctcggcacagttaatggcactggaagaattcacggggt-ttttcta-acacgcccgtg 59

                                       
Query: 60 atctcttagtggcatctatggtgcgggat 88
          |||||||||||||||||||||||||||||
Sbjct: 60 atctcttagtggcatctatggtgcgggat 88




>RF00706;mir-263;AAZX01007729.1/30973-30881 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 93

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 15 aatggcactggaagaattcacggggtaattt 45
          ||||||||||||||||||||||||| |||||
Sbjct: 17 aatggcactggaagaattcacgggggaattt 47




>RF00706;mir-263;BAAB01106279.1/2818-2907 7091:Bombyx mori
          (domestic silkworm)
          Length = 90

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 55/62 (88%), Gaps = 2/62 (3%)
 Strand = Plus / Plus

                                                                      
Query: 15 aatggcactggaagaattcacggggt-aatttctatacaacccgtgatctcttagtggca 73
          |||||||||||||||||||||||| | | ||| ||||   ||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggttcagtttatata-ttcccgtgatctcttagtggca 74

            
Query: 74 tc 75
          ||
Sbjct: 75 tc 76




>RF00706;mir-263;AAJJ01000157.1/103377-103289 7070:Tribolium
          castaneum (red flour beetle)
          Length = 89

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 15 aatggcactggaagaattcacggggt 40
          ||||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggt 41




>RF00706;mir-263;ABJB010285488.1/4151-4241 6945:Ixodes scapularis
          (black-legged tick)
          Length = 91

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 15 aatggcactggaagaattcacggggt 40
          ||||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggt 41




>RF00706;mir-263;AADG05003940.1/44836-44746 7460:Apis mellifera
          (honey bee)
          Length = 91

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 aatggcactggaagaattcacgggg 39
          |||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40




>RF00706;mir-263;AAWU01014939.1/4076-3988 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 89

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 taatggcactggaagaattcacggg 38
          |||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39




>RF00706;mir-263;AAGE02027430.1/4828-4738 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 91

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 taatggcactggaagaattcacggg 38
          |||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39




>RF00706;mir-263;AAAB01008944.1/325742-325831 180454:Anopheles
          gambiae str. PEST
          Length = 90

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 taatggcactggaagaattcacggg 38
          |||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39




>RF00706;mir-263;ABLF01028761.1/10726-10634 7029:Acyrthosiphon
          pisum (pea aphid)
          Length = 93

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 15 aatggcactggaagaattcacggggta 41
          |||||||||| ||||||||||||||||
Sbjct: 16 aatggcactgaaagaattcacggggta 42