miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36193_der-mir-274:mirbase
Length = 97
Score = 103 bits (52), Expect = 2e-23
Identities = 86/96 (89%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 1 tgttgcagtttcgttttgtgaccgacactaacgggtattttacaggacatacaggattac 60
||||||||||||||||||||||||||||||||||||| || || | |||||||||
Sbjct: 3 tgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgc-caggattac 61
Query: 61 tcgtttttgcgatcacaaatcctgaaattgcagcaa 96
||||||||||||||||||||| ||||||||||||||
Sbjct: 62 tcgtttttgcgatcacaaatcatgaaattgcagcaa 97
>37153_dse-mir-274:mirbase
Length = 97
Score = 103 bits (52), Expect = 2e-23
Identities = 86/96 (89%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 1 tgttgcagtttcgttttgtgaccgacactaacgggtattttacaggacatacaggattac 60
||||||||||||||||||||||||||||||||||||| || | || |||||||||
Sbjct: 3 tgttgcagtttcgttttgtgaccgacactaacgggtaattgtttgatcac-caggattac 61
Query: 61 tcgtttttgcgatcacaaatcctgaaattgcagcaa 96
||||||||||||||||||||| ||||||||||||||
Sbjct: 62 tcgtttttgcgatcacaaatcatgaaattgcagcaa 97
>37522_dya-mir-274:mirbase
Length = 97
Score = 103 bits (52), Expect = 2e-23
Identities = 86/96 (89%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 1 tgttgcagtttcgttttgtgaccgacactaacgggtattttacaggacatacaggattac 60
||||||||||||||||||||||||||||||||||||| || || | |||||||||
Sbjct: 3 tgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgc-caggattac 61
Query: 61 tcgtttttgcgatcacaaatcctgaaattgcagcaa 96
||||||||||||||||||||| ||||||||||||||
Sbjct: 62 tcgtttttgcgatcacaaatcatgaaattgcagcaa 97
>36409_dme-mir-274:mirbase
Length = 100
Score = 95.6 bits (48), Expect = 5e-21
Identities = 85/96 (88%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 1 tgttgcagtttcgttttgtgaccgacactaacgggtattttacaggacatacaggattac 60
||||||||||||||||||||||||||||||||||||| || || | |||||||||
Sbjct: 6 tgttgcagtttcgttttgtgaccgacactaacgggtaattgtttgg-ccgccaggattac 64
Query: 61 tcgtttttgcgatcacaaatcctgaaattgcagcaa 96
|||||||||||||||||||| ||||||||||||||
Sbjct: 65 tcgtttttgcgatcacaaattatgaaattgcagcaa 100
>36410_dme-mir-274:mirbase
Length = 100
Score = 95.6 bits (48), Expect = 5e-21
Identities = 85/96 (88%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 1 tgttgcagtttcgttttgtgaccgacactaacgggtattttacaggacatacaggattac 60
||||||||||||||||||||||||||||||||||||| || || | |||||||||
Sbjct: 6 tgttgcagtttcgttttgtgaccgacactaacgggtaattgtttgg-ccgccaggattac 64
Query: 61 tcgtttttgcgatcacaaatcctgaaattgcagcaa 96
|||||||||||||||||||| ||||||||||||||
Sbjct: 65 tcgtttttgcgatcacaaattatgaaattgcagcaa 100
>37367_dvi-mir-274:mirbase
Length = 105
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 tgttgcagtttcgttttgtgaccgacactaacgggta 37
||||||||||||| |||||||||||||||||||||||
Sbjct: 4 tgttgcagtttcggtttgtgaccgacactaacgggta 40
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaatcctgaaattgca 92
|||||||||||||||||||||||| |||||||||||
Sbjct: 66 ttactcgtttttgcgatcacaaattctgaaattgca 101
>37446_dwi-mir-274:mirbase
Length = 105
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 2 gttgcagtttcgttttgtgaccgacactaacgggta 37
||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gttgcagtttcattttgtgaccgacactaacgggta 36
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaatcctgaaattgca 92
|||||||||||||||||||||||| |||||||||||
Sbjct: 70 ttactcgtttttgcgatcacaaattctgaaattgca 105
>36867_dpe-mir-274:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 4 tgcagtttcgttttgtgaccgacactaacgggta 37
||||||||| ||||||||||||||||||||||||
Sbjct: 6 tgcagtttcattttgtgaccgacactaacgggta 39
>36946_dps-mir-274:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 4 tgcagtttcgttttgtgaccgacactaacgggta 37
||||||||| ||||||||||||||||||||||||
Sbjct: 9 tgcagtttcattttgtgaccgacactaacgggta 42
>36790_dmo-mir-274:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tactcgtttttgcgatcacaaatcctgaaa 87
||||||||||||||||||||||| ||||||
Sbjct: 58 tactcgtttttgcgatcacaaattctgaaa 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 tttcgttttgtgaccgacactaacgggta 37
||||| |||||||||||||||||||||||
Sbjct: 1 tttcggtttgtgaccgacactaacgggta 29
>36282_dgr-mir-274:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaat 80
||||||||||||||||||||||||
Sbjct: 57 ttactcgtttttgcgatcacaaat 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tttgtgaccgacactaacgggta 37
|||||||||||||||||||||||
Sbjct: 5 tttgtgaccgacactaacgggta 27
