miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00747;mir-283;AAQB01006319.1/8842-8742 7260:Drosophila willistoni
Length = 101
Score = 131 bits (66), Expect = 2e-30
Identities = 89/94 (94%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 4 attcttaaaggtaaatatcagctggtaattctgggagctatgcct-gat-tatgaaacac 61
||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 7 attctcaaaggtaaatatcagctggtaattctgggagctatgcctagatatttgaaacac 66
Query: 62 tcggaatttcagttggtatcgactttttcgaatt 95
|||||||||||||||||||||||||||| |||||
Sbjct: 67 tcggaatttcagttggtatcgacttttttgaatt 100
>RF00747;mir-283;AAPU01008564.1/40966-41063 7230:Drosophila
mojavensis
Length = 98
Score = 113 bits (57), Expect = 4e-25
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 3 gattcttaaaggtaaatatcagctggtaattctgggagctatgcctgattatgaaacact 62
|||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 6 gattctcaaaggtaaatatcagctggtaattctgggagcaatgcc-caatatgaaacact 64
Query: 63 cggaatttcagttggtatcgactttttcgaatt 95
|||||||||||||||||| ||||||| |||||
Sbjct: 65 cggaatttcagttggtatatacttttttgaatt 97
>RF00747;mir-283;ABKQ02004749.1/31643-31736 377270:Anopheles
gambiae S
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 aaaggtaaatatcagctggtaattct 35
||||||||||||||||||||||||||
Sbjct: 11 aaaggtaaatatcagctggtaattct 36
>RF00747;mir-283;AAWU01005348.1/2399-2495 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 97
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 aaaggtaaatatcagctggtaattctggg 38
|||||| ||||||||||||||||||||||
Sbjct: 11 aaaggtcaatatcagctggtaattctggg 39
>RF00747;mir-283;AAGE02004323.1/32429-32333 7159:Aedes aegypti
(yellow fever mosquito)
Length = 97
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 aaaggtaaatatcagctggtaattctggg 38
|||||| ||||||||||||||||||||||
Sbjct: 11 aaaggtcaatatcagctggtaattctggg 39
>RF00747;mir-283;BAAB01105947.1/481-397 7091:Bombyx mori (domestic
silkworm)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 taaatatcagctggtaattctggg 38
||||||||||||||||||||||||
Sbjct: 16 taaatatcagctggtaattctggg 39
>RF00747;mir-283;AAZX01000006.1/24204-24295 7425:Nasonia
vitripennis (jewel wasp)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 aaatatcagctggtaattctggga 39
||||||||||||||||||||||||
Sbjct: 19 aaatatcagctggtaattctggga 42
>RF00747;mir-283;AADG05008150.1/23792-23703 7460:Apis mellifera
(honey bee)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 aaatatcagctggtaattctggga 39
||||||||||||||||||||||||
Sbjct: 19 aaatatcagctggtaattctggga 42
>RF00747;mir-283;AAJJ01001605.1/25781-25866 7070:Tribolium
castaneum (red flour beetle)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaatatcagctggtaattctggg 38
|||||||||||||||||||||||
Sbjct: 17 aaatatcagctggtaattctggg 39
