miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00789;mir-286;AAPP01018770.1/56774-56877 7217:Drosophila
ananassae
Length = 104
Score = 163 bits (82), Expect = 5e-40
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 1 ttaaaattgaatggcgattgtcggtatggtcgctttttcacnnnnnnnttggttaccaac 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 ttaaaattgaatggcgattgtcggtatggtcgctttttcacaaaaaaattggttaccaac 60
Query: 61 aagcgaagtgactagaccgaacactcgtgctataattttaaaa 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagcgaagtgactagaccgaacactcgtgctataattttaaaa 103
>RF00789;mir-286;AAPQ01007044.1/1205305-1205207 7220:Drosophila
erecta
Length = 99
Score = 85.7 bits (43), Expect = 1e-16
Identities = 87/103 (84%), Gaps = 5/103 (4%)
Strand = Plus / Plus
Query: 1 ttaaaattgaatggcgattgtcggtatggtcgctttttcacnnnnnnnttggttaccaac 60
||||||||||||||||| ||||||||||||| |||||||| |||| | | |
Sbjct: 1 ttaaaattgaatggcgaatgtcggtatggtctctttttcaaagaa-----ggtttcgatc 55
Query: 61 aagcgaagtgactagaccgaacactcgtgctataattttaaaa 103
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 gagcgaagtgactagaccgaacactcgtgctataattttaaaa 98
>RF00789;mir-286;AAFS01000371.1/25325-25421 46245:Drosophila
pseudoobscura pseudoobscura
Length = 97
Score = 81.8 bits (41), Expect = 2e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 60 caagcgaagtgactagaccgaacactcgtgctataatttta 100
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 caagcgaagtgactagaccgaacactcgtgctataatttta 93
>RF00789;mir-286;AAQB01006291.1/71587-71475 7260:Drosophila
willistoni
Length = 113
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 66 aagtgactagaccgaacactcgtgctataattttaaaa 103
||||||||||||||||||||||||||||||||||||||
Sbjct: 75 aagtgactagaccgaacactcgtgctataattttaaaa 112
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 ttaaaattgaatggcgattgtcggtatggtcgctttttc 39
||||||||||||||||||||||||||| ||| |||||||
Sbjct: 1 ttaaaattgaatggcgattgtcggtatagtctctttttc 39
>RF00789;mir-286;AAPT01006453.1/2821-2925 7222:Drosophila grimshawi
Length = 105
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 66 aagtgactagaccgaacactcgtgctataattttaaaa 103
||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aagtgactagaccgaacactcgtgctataattttaaaa 104
Score = 65.9 bits (33), Expect = 9e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ttaaaattgaatggcgattgtcggtatggtcgctttt 37
|||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ttaaaattaaatggcgattgtcggtatggtcgctttt 37
>RF00789;mir-286;AAPU01010225.1/183664-183561 7230:Drosophila
mojavensis
Length = 104
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 66 aagtgactagaccgaacactcgtgctataattttaaaa 103
||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aagtgactagaccgaacactcgtgctataattttaaaa 103
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 ttaaaattgaatggcgattgtcggtatggtcgctttttca 40
|||||||| |||||||||||||||||||||| ||||||||
Sbjct: 1 ttaaaattaaatggcgattgtcggtatggtctctttttca 40
>RF00789;mir-286;AANI01014795.1/39192-39293 7244:Drosophila virilis
Length = 102
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 66 aagtgactagaccgaacactcgtgctataattttaaaa 103
||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aagtgactagaccgaacactcgtgctataattttaaaa 101
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1 ttaaaattgaatggcgattgtcggtatggtcgctttttca 40
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 ttaaaattaaatggcgattgtcggtatggtcgctttttca 40
>RF00789;mir-286;ABKP02021621.1/18938-19014 377271:Anopheles
gambiae M
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 aagtgactagaccgaacactcgt 88
|||||||||||||||||||||||
Sbjct: 45 aagtgactagaccgaacactcgt 67
>RF00789;mir-286;AAWU01006018.1/401-308 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 agtgactagaccgaacactcgt 88
||||||||||||||||||||||
Sbjct: 59 agtgactagaccgaacactcgt 80
>RF00789;mir-286;AAWU01011011.1/917-844 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 aagtgactagaccgaacactcg 87
||||||||||||||||||||||
Sbjct: 42 aagtgactagaccgaacactcg 63
>RF00789;mir-286;AAGE02008291.1/17656-17755 7159:Aedes aegypti
(yellow fever mosquito)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 agtgactagaccgaacactcgt 88
||||||||||||||||||||||
Sbjct: 64 agtgactagaccgaacactcgt 85
