miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36438_dme-mir-287:mirbase
Length = 93
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 9 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcaca 68
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 86
Query: 69 actgt 73
|||||
Sbjct: 87 actgt 91
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>36962_dps-mir-287:mirbase
Length = 80
Score = 121 bits (61), Expect = 7e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 13 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactg 77
Query: 73 t 73
|
Sbjct: 78 t 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
||||||||||||| |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36881_dpe-mir-287:mirbase
Length = 75
Score = 115 bits (58), Expect = 4e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 13 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaac 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaac 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
||||||||||||| |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36208_der-mir-287:mirbase
Length = 90
Score = 113 bits (57), Expect = 2e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 12 tctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaact 71
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 27 tctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgact 86
Query: 72 g 72
|
Sbjct: 87 g 87
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
||||||||||||| |||||||||||||
Sbjct: 66 acacatttacaattattgtaaatgtgt 40
>37168_dse-mir-287:mirbase
Length = 71
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 9 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcaca 68
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 64
Query: 69 actgt 73
|||||
Sbjct: 65 actgt 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
||||||||||||| |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>37244_dsi-mir-287:mirbase
Length = 71
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 9 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcaca 68
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 64
Query: 69 actgt 73
|||||
Sbjct: 65 actgt 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
||||||||||||| |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>36298_dgr-mir-287-1:mirbase
Length = 73
Score = 111 bits (56), Expect = 7e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 14 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgt 73
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
|||||||||||| |||||||||||||
Sbjct: 49 acacatttacaaatattgtaaatgtgt 23
>36299_dgr-mir-287-2:mirbase
Length = 73
Score = 111 bits (56), Expect = 7e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 14 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgt 73
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
|||||||||||| |||||||||||||
Sbjct: 49 acacatttacaaatattgtaaatgtgt 23
>36805_dmo-mir-287:mirbase
Length = 62
Score = 111 bits (56), Expect = 7e-26
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 14 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 62
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
||||||||||||| |||||||||||||
Sbjct: 44 acacatttacaattattgtaaatgtgt 18
>37382_dvi-mir-287:mirbase
Length = 68
Score = 111 bits (56), Expect = 7e-26
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 14 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
||||||||||||| |||||||||||||
Sbjct: 50 acacatttacaattattgtaaatgtgt 24
>37537_dya-mir-287:mirbase
Length = 77
Score = 111 bits (56), Expect = 7e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 7 gtgggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgca 66
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 9 gtgggtctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgca 68
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
||||||||||||| | |||||||||||
Sbjct: 53 acacatttacaattactgtaaatgtgt 27
>37461_dwi-mir-287:mirbase
Length = 73
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 11 gtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 69
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 13 gtctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 25 acacatttacaataattgtaaatgtgt 51
|||||||||||||||||||||||||||
Sbjct: 53 acacatttacaataattgtaaatgtgt 27
