miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36963_dps-mir-288:mirbase
Length = 96
Score = 159 bits (80), Expect = 4e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 4 catgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttg 63
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
||||||||||||||||||||||||||||||||
Sbjct: 64 gtttcatgtcgatttcatttcatgacacggcc 95
>36882_dpe-mir-288:mirbase
Length = 96
Score = 151 bits (76), Expect = 1e-37
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct: 4 catgtcgtaattagcagggtacagcgttgccggcgaaaattaatgacgttggtcacgttg 63
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
||||||||||||||||||||||||||||||||
Sbjct: 64 gtttcatgtcgatttcatttcatgacacggcc 95
>37169_dse-mir-288:mirbase
Length = 97
Score = 143 bits (72), Expect = 2e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
||||||||||||||| | |||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96
>37245_dsi-mir-288:mirbase
Length = 97
Score = 143 bits (72), Expect = 2e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
||||||||||||||| | |||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96
>36806_dmo-mir-288:mirbase
Length = 96
Score = 137 bits (69), Expect = 2e-33
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 4 gtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttggtt 63
|||||||||||| | |||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 7 gtcgtaattagctgtgcacagcgttgctggcgataattaatgacgttggtcacgttggtt 66
Query: 64 tcatgtcgatttcatttcatgacacggcc 92
|||||||||||||||||||||||||||||
Sbjct: 67 tcatgtcgatttcatttcatgacacggcc 95
>36439_dme-mir-288:mirbase
Length = 97
Score = 135 bits (68), Expect = 6e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
||||||||||||||| | |||| | || |||||||||||||||||||| |||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96
>37538_dya-mir-288:mirbase
Length = 96
Score = 135 bits (68), Expect = 6e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
||||||||||||||| | |||| | |||||||||||||||||||||| |||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttg 64
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96
>37462_dwi-mir-288:mirbase
Length = 94
Score = 131 bits (66), Expect = 9e-32
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 4 gtcgtaattagcagggcacagaatt-gccggcgataattaatgacgttggtcacgttggt 62
|||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct: 4 gtcgtaattagcagcgcacaacattcgtcggcgataattaatgacgttggtcacgttggt 63
Query: 63 ttcatgtcgatttcatttcatgacacggcc 92
||||||||||||||||||||||||||||||
Sbjct: 64 ttcatgtcgatttcatttcatgacacggcc 93
>36300_dgr-mir-288:mirbase
Length = 96
Score = 121 bits (61), Expect = 9e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 32 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 94
Query: 92 c 92
|
Sbjct: 95 c 95
>37383_dvi-mir-288:mirbase
Length = 97
Score = 121 bits (61), Expect = 9e-29
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 4 gtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttggtt 63
|||||||||||| | ||||| |||| |||||||||||||||| |||||||||||||||
Sbjct: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
Query: 64 tcatgtcgatttcatttcatgacacggcc 92
|||||||||||||||||||||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggcc 96
>36209_der-mir-288:mirbase
Length = 97
Score = 119 bits (60), Expect = 4e-28
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
||||||||||||||| | || | | |||||||||||||||||||||| |||||||||||
Sbjct: 5 catgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttg 64
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
|||||||||||||||||||||| |||||||||
Sbjct: 65 gtttcatgtcgatttcatttcaggacacggcc 96
