miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36963_dps-mir-288:mirbase
          Length = 96

 Score =  159 bits (80), Expect = 4e-40
 Identities = 89/92 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
          ||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||
Sbjct: 4  catgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttg 63

                                          
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
          ||||||||||||||||||||||||||||||||
Sbjct: 64 gtttcatgtcgatttcatttcatgacacggcc 95




>36882_dpe-mir-288:mirbase
          Length = 96

 Score =  151 bits (76), Expect = 1e-37
 Identities = 88/92 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
          ||||||||||||||||||| ||||  |||||||||| |||||||||||||||||||||||
Sbjct: 4  catgtcgtaattagcagggtacagcgttgccggcgaaaattaatgacgttggtcacgttg 63

                                          
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
          ||||||||||||||||||||||||||||||||
Sbjct: 64 gtttcatgtcgatttcatttcatgacacggcc 95




>37169_dse-mir-288:mirbase
          Length = 97

 Score =  143 bits (72), Expect = 2e-35
 Identities = 87/92 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
          ||||||||||||||| | |||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 5  catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64

                                          
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
          ||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96




>37245_dsi-mir-288:mirbase
          Length = 97

 Score =  143 bits (72), Expect = 2e-35
 Identities = 87/92 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
          ||||||||||||||| | |||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 5  catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64

                                          
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
          ||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96




>36806_dmo-mir-288:mirbase
          Length = 96

 Score =  137 bits (69), Expect = 2e-33
 Identities = 84/89 (94%)
 Strand = Plus / Plus

                                                                      
Query: 4  gtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttggtt 63
          |||||||||||| | ||||||  |||| ||||||||||||||||||||||||||||||||
Sbjct: 7  gtcgtaattagctgtgcacagcgttgctggcgataattaatgacgttggtcacgttggtt 66

                                       
Query: 64 tcatgtcgatttcatttcatgacacggcc 92
          |||||||||||||||||||||||||||||
Sbjct: 67 tcatgtcgatttcatttcatgacacggcc 95




>36439_dme-mir-288:mirbase
          Length = 97

 Score =  135 bits (68), Expect = 6e-33
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
          ||||||||||||||| | |||| | || |||||||||||||||||||| |||||||||||
Sbjct: 5  catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64

                                          
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
          ||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96




>37538_dya-mir-288:mirbase
          Length = 96

 Score =  135 bits (68), Expect = 6e-33
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
          ||||||||||||||| | |||| |  |||||||||||||||||||||| |||||||||||
Sbjct: 5  catgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttg 64

                                          
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
          ||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96




>37462_dwi-mir-288:mirbase
          Length = 94

 Score =  131 bits (66), Expect = 9e-32
 Identities = 85/90 (94%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  gtcgtaattagcagggcacagaatt-gccggcgataattaatgacgttggtcacgttggt 62
          |||||||||||||| |||||  ||| | ||||||||||||||||||||||||||||||||
Sbjct: 4  gtcgtaattagcagcgcacaacattcgtcggcgataattaatgacgttggtcacgttggt 63

                                        
Query: 63 ttcatgtcgatttcatttcatgacacggcc 92
          ||||||||||||||||||||||||||||||
Sbjct: 64 ttcatgtcgatttcatttcatgacacggcc 93




>36300_dgr-mir-288:mirbase
          Length = 96

 Score =  121 bits (61), Expect = 9e-29
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 32 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 91
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 94

           
Query: 92 c 92
          |
Sbjct: 95 c 95




>37383_dvi-mir-288:mirbase
          Length = 97

 Score =  121 bits (61), Expect = 9e-29
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                      
Query: 4  gtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttggtt 63
          |||||||||||| | |||||   |||| |||||||||||||||| |||||||||||||||
Sbjct: 8  gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67

                                       
Query: 64 tcatgtcgatttcatttcatgacacggcc 92
          |||||||||||||||||||||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggcc 96




>36209_der-mir-288:mirbase
          Length = 97

 Score =  119 bits (60), Expect = 4e-28
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
          ||||||||||||||| | || | |  |||||||||||||||||||||| |||||||||||
Sbjct: 5  catgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttg 64

                                          
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
          |||||||||||||||||||||| |||||||||
Sbjct: 65 gtttcatgtcgatttcatttcaggacacggcc 96