miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00787;mir-288;AC093440.2/172834-172738 7227:Drosophila
melanogaster (fruit fly)
Length = 97
Score = 135 bits (68), Expect = 1e-31
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
||||||||||||||| | |||| | || |||||||||||||||||||| |||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
Query: 61 gtttcatgtcgatttcatttcatgacacggcc 92
||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96
>RF00787;mir-288;AAQB01006401.1/336794-336697 7260:Drosophila
willistoni
Length = 98
Score = 131 bits (66), Expect = 2e-30
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 4 gtcgtaattagcagggcacagaatt-gccggcgataattaatgacgttggtcacgttggt 62
|||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct: 8 gtcgtaattagcagcgcacaacattcgtcggcgataattaatgacgttggtcacgttggt 67
Query: 63 ttcatgtcgatttcatttcatgacacggcc 92
||||||||||||||||||||||||||||||
Sbjct: 68 ttcatgtcgatttcatttcatgacacggcc 97
>RF00787;mir-288;AANI01016239.1/44496-44592 7244:Drosophila
virilis
Length = 97
Score = 121 bits (61), Expect = 2e-27
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 4 gtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttggtt 63
|||||||||||| | ||||| |||| |||||||||||||||| |||||||||||||||
Sbjct: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
Query: 64 tcatgtcgatttcatttcatgacacggcc 92
|||||||||||||||||||||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggcc 96
