miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36211_der-mir-304:mirbase
Length = 88
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagccatttgacggactcac 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgagactgc 88
||||||| ||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>37171_dse-mir-304:mirbase
Length = 88
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagccatttgacggactcac 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgagactgc 88
||||||| ||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>37248_dsi-mir-304:mirbase
Length = 88
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagccatttgacggactcac 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgagactgc 88
||||||| ||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>37540_dya-mir-304:mirbase
Length = 88
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagccatttgacggactcac 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgagactgc 88
||||||| ||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>36443_dme-mir-304:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagccatttgacggactcac 60
|||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgagactgc 88
||||||| ||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>36444_dme-mir-304:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagccatttgacggactcac 60
|||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
Query: 61 tttgcaactggagattgctcgagactgc 88
||||||| ||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>36965_dps-mir-304:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagccatttgacggactcac 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
Query: 61 tttgcaactggagattgctcgagactgc 88
|||||||||||||||||||||| |||||
Sbjct: 61 tttgcaactggagattgctcgaaactgc 88
>36807_dmo-mir-304:mirbase
Length = 89
Score = 113 bits (57), Expect = 2e-26
Identities = 82/89 (92%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcga-tttgagccatttgacggactca 59
|||||||||| |||||||||||||||||||||||||| ||| | | |||||||| |||||
Sbjct: 1 gcagcattgattaatctcaatttgtaaatgtgagcgatttttaactatttgacgcactca 60
Query: 60 ctttgcaactggagattgctcgagactgc 88
|||||||| ||||||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgagactgc 89
>36301_dgr-mir-304:mirbase
Length = 89
Score = 105 bits (53), Expect = 5e-24
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatt-tgagccatttgacggactca 59
||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgattattaagaatttgacgcactca 60
Query: 60 ctttgcaactggagattgctcgaga 84
|||||||| ||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgaga 85
>37384_dvi-mir-304:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagcc-atttgacggactca 59
|||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
Query: 60 ctttgcaactggagattgctcgaga 84
|||||||| ||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgaga 85
>37463_dwi-mir-304:mirbase
Length = 89
Score = 89.7 bits (45), Expect = 3e-19
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 cattgaataatctcaatttgtaaatgtgagcgattt-gagccatttgacggactcacttt 63
|||||| ||||||||||||||||||||||||||||| | ||||| || | |||||||||
Sbjct: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
Query: 64 gcaactggagattgctcgaga 84
|||| ||||||||||||||||
Sbjct: 65 gcaattggagattgctcgaga 85
