miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00853;mir-304;AAFS01000251.1/56138-56051 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 143 bits (72), Expect = 4e-34
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagccatttgacggactcac 60
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
Query: 61 tttgcaactggagattgctcgagactgc 88
|||||||||||||||||||||| |||||
Sbjct: 61 tttgcaactggagattgctcgaaactgc 88
>RF00853;mir-304;AAPU01008564.1/42415-42503 7230:Drosophila
mojavensis
Length = 89
Score = 113 bits (57), Expect = 4e-25
Identities = 82/89 (92%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcga-tttgagccatttgacggactca 59
|||||||||| |||||||||||||||||||||||||| ||| | | |||||||| |||||
Sbjct: 1 gcagcattgattaatctcaatttgtaaatgtgagcgatttttaactatttgacgcactca 60
Query: 60 ctttgcaactggagattgctcgagactgc 88
|||||||| ||||||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgagactgc 89
>RF00853;mir-304;AAQB01006319.1/7240-7152 7260:Drosophila
willistoni
Length = 89
Score = 89.7 bits (45), Expect = 5e-18
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 cattgaataatctcaatttgtaaatgtgagcgattt-gagccatttgacggactcacttt 63
|||||| ||||||||||||||||||||||||||||| | ||||| || | |||||||||
Sbjct: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
Query: 64 gcaactggagattgctcgaga 84
|||| ||||||||||||||||
Sbjct: 65 gcaattggagattgctcgaga 85
