miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36213_der-mir-306:mirbase
Length = 85
Score = 91.7 bits (46), Expect = 7e-20
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 gtccacttggtagctcaggtacttagtgactctcaatgcatttgacattttgggagccac 60
||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct: 1 gtccactcggtggctcaggtacttagtgactctcaatgcttttgacattttgggggtcac 60
Query: 61 tttgtgcctg 70
| ||||||||
Sbjct: 61 tctgtgcctg 70
>37542_dya-mir-306:mirbase
Length = 85
Score = 91.7 bits (46), Expect = 7e-20
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 gtccacttggtagctcaggtacttagtgactctcaatgcatttgacattttgggagccac 60
||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct: 1 gtccactcggtggctcaggtacttagtgactctcaatgcttttgacattttgggggtcac 60
Query: 61 tttgtgcctg 70
| ||||||||
Sbjct: 61 tctgtgcctg 70
>36447_dme-mir-306:mirbase
Length = 85
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaatgcatttgacattttgggagccactttgtgcctg 70
||||||||||||||||||||||||||| |||||||||||||| | |||| ||||||||
Sbjct: 13 gctcaggtacttagtgactctcaatgcttttgacattttgggggtcactctgtgcctg 70
>36448_dme-mir-306:mirbase
Length = 85
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaatgcatttgacattttgggagccactttgtgcctg 70
||||||||||||||||||||||||||| |||||||||||||| | |||| ||||||||
Sbjct: 13 gctcaggtacttagtgactctcaatgcttttgacattttgggggtcactctgtgcctg 70
>37173_dse-mir-306:mirbase
Length = 84
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaatgcatttgacattttgggagccactttgtgcctg 70
||||||||||||||||||||||||||| |||||||||||||| | |||| ||||||||
Sbjct: 12 gctcaggtacttagtgactctcaatgcctttgacattttgggggtcactctgtgcctg 69
>36885_dpe-mir-306:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaatgcatttgacattttgggagccactttgtgcctg 70
||||||||||||||||||||||||||| || ||||| ||| ||| | || ||||||||
Sbjct: 11 gctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctctgtgcctg 68
>36967_dps-mir-306:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaatgcatttgacattttgggagccactttgtgcctg 70
||||||||||||||||||||||||||| || ||||| ||| ||| | || ||||||||
Sbjct: 11 gctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctctgtgcctg 68
>36303_dgr-mir-306:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaat 37
|||||||||||||||||||||||||
Sbjct: 3 gctcaggtacttagtgactctcaat 27
>36809_dmo-mir-306:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaat 37
|||||||||||||||||||||||||
Sbjct: 1 gctcaggtacttagtgactctcaat 25
>37386_dvi-mir-306:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaat 37
|||||||||||||||||||||||||
Sbjct: 6 gctcaggtacttagtgactctcaat 30
>37465_dwi-mir-306-1:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaa 36
||||||||||||||||||||||||
Sbjct: 1 gctcaggtacttagtgactctcaa 24
>37466_dwi-mir-306-2:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaa 36
||||||||||||||||||||||||
Sbjct: 1 gctcaggtacttagtgactctcaa 24
>36042_cqu-mir-306:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctca 35
||||||||||| |||||||||||
Sbjct: 4 gctcaggtactgagtgactctca 26
