miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00716;mir-3;AAPP01018770.1/56527-56595 7217:Drosophila
ananassae
Length = 69
Score = 135 bits (68), Expect = 7e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttcggttttgccaatttcctagcagcactgggtaaagtttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 attatacgacaaaccttgttcggttttgccaatttcctagcagcactgggtaaagtttgt 61
Query: 61 cctataat 68
||||||||
Sbjct: 62 cctataat 69
>RF00716;mir-3;AASV01026474.1/1205-1274 7240:Drosophila simulans
Length = 70
Score = 113 bits (57), Expect = 3e-25
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttcggttttgccaatttcctag-cagcactgggtaaagtttg 59
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 2 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 61
Query: 60 tcctataat 68
|||||||||
Sbjct: 62 tcctataat 70
>RF00716;mir-3;AAFS01000371.1/25053-25121 46245:Drosophila
pseudoobscura pseudoobscura
Length = 69
Score = 71.9 bits (36), Expect = 9e-13
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttcggttttgccaatttcctagcagcactgggtaaagtttgt 60
||||||||| |||| |||||| |||||||||| || || |||||||||||| ||||||||
Sbjct: 2 attatacgataaactttgttcagttttgccaacttgcttgcagcactgggtgaagtttgt 61
Query: 61 cctataat 68
| ||||||
Sbjct: 62 cttataat 69
