miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00717;mir-315;AAPQ01006582.1/536778-536860 7220:Drosophila
erecta
Length = 83
Score = 103 bits (52), Expect = 3e-22
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cacttatataattttgattgttgctcagaaagcccttataaattattagctggctttcga 60
||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct: 1 cacttatataattttgattgttgctcagaaagccc-tattatctaacagctggctttcga 59
Query: 61 gcaataattgaaaccaaataagtg 84
|||||||||||||||| |||||||
Sbjct: 60 gcaataattgaaaccagataagtg 83
>RF00717;mir-315;AAFS01000172.1/91075-90992 46245:Drosophila
pseudoobscura pseudoobscura
Length = 84
Score = 79.8 bits (40), Expect = 5e-15
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 cacttatataattttgattgttgctcagaaagcccttataaattattagctggctttcga 60
||||||| || |||||||||||||||||||||||||||||| | | || ||||||||||
Sbjct: 1 cacttatctatttttgattgttgctcagaaagcccttataattaaccagttggctttcga 60
Query: 61 gcaataattgaaaccaaataagtg 84
||||| || || |||||||||||
Sbjct: 61 gcaattatcaaagccaaataagtg 84
>RF00717;mir-315;AASU01006755.1/588-667 7240:Drosophila simulans
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 cacttatataattttgattgttgctcagaaagcccttat 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacttatataattttgattgttgctcagaaagcccttat 39
>RF00717;mir-315;AAPU01011669.1/1431-1347 7230:Drosophila
mojavensis
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 72/83 (86%), Gaps = 5/83 (6%)
Strand = Plus / Plus
Query: 3 cttatataattttgattgttgctcagaaagccctta---taaattattagctggctttcg 59
||||||||||||||||||||||||||||||||| || ||| ||| | |||||||||
Sbjct: 3 cttatataattttgattgttgctcagaaagcccgtaatttaactta--acatggctttcg 60
Query: 60 agcaataattgaaaccaaataag 82
|| |||||| |||||||||||||
Sbjct: 61 agtaataatcgaaaccaaataag 83
>RF00717;mir-315;AAPT01020729.1/201657-201576 7222:Drosophila
grimshawi
Length = 82
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 atataattttgattgttgctcagaaagcc 34
|||||||||||||||||||||||||||||
Sbjct: 6 atataattttgattgttgctcagaaagcc 34
>RF00717;mir-315;AANI01017430.1/85121-85040 7244:Drosophila
virilis
Length = 82
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatataattttgattgttgctcagaaagccct 36
||||| ||||||||||||||||||||||||||
Sbjct: 5 tatatcattttgattgttgctcagaaagccct 36
>RF00717;mir-315;AAGE02021501.1/12488-12571 7159:Aedes aegypti
(yellow fever mosquito)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 tatataattttgattgttgctcagaaagcc 34
|||| |||||||||||||||||||||||||
Sbjct: 5 tataaaattttgattgttgctcagaaagcc 34
>RF00717;mir-315;AAAB01006400.1/15231-15314 180454:Anopheles
gambiae str. PEST
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 tatataattttgattgttgctcagaaagcc 34
|||| |||||||||||||||||||||||||
Sbjct: 5 tataaaattttgattgttgctcagaaagcc 34
>RF00717;mir-315;ABLF01028780.1/3045-2960 7029:Acyrthosiphon pisum
(pea aphid)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attttgattgttgctcagaaagcc 34
||||||||||||||||||||||||
Sbjct: 11 attttgattgttgctcagaaagcc 34
>RF00717;mir-315;AAZX01000470.1/15987-15906 7425:Nasonia
vitripennis (jewel wasp)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>RF00717;mir-315;AADG05000960.1/7218-7138 7460:Apis mellifera
(honey bee)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>RF00717;mir-315;AAJJ01004236.1/2476-2553 7070:Tribolium castaneum
(red flour beetle)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 11 ttttgattgttgctcagaaagcc 33
