miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36471_dme-mir-317:mirbase
Length = 92
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 73 tccagtggccgttttgcat 91
|||||||||||||| ||||
Sbjct: 74 tccagtggccgtttggcat 92
>36472_dme-mir-317:mirbase
Length = 92
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 73 tccagtggccgttttgcat 91
|||||||||||||| ||||
Sbjct: 74 tccagtggccgtttggcat 92
>37184_dse-mir-317:mirbase
Length = 92
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 73 tccagtggccgttttgcat 91
|||||||||||||| ||||
Sbjct: 74 tccagtggccgtttggcat 92
>37260_dsi-mir-317:mirbase
Length = 92
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 73 tccagtggccgttttgcat 91
|||||||||||||| ||||
Sbjct: 74 tccagtggccgtttggcat 92
>36228_der-mir-317:mirbase
Length = 92
Score = 147 bits (74), Expect = 2e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 73 tccagtggccgttt 86
||||||||||||||
Sbjct: 74 tccagtggccgttt 87
>37555_dya-mir-317:mirbase
Length = 92
Score = 147 bits (74), Expect = 2e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 73 tccagtggccgttt 86
||||||||||||||
Sbjct: 74 tccagtggccgttt 87
>37396_dvi-mir-317:mirbase
Length = 86
Score = 111 bits (56), Expect = 9e-26
Identities = 71/75 (94%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 11 gctgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtgg 70
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gctgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtgg 68
Query: 71 tatccagtggccgtt 85
|||||||||||||||
Sbjct: 69 tatccagtggccgtt 83
>37473_dwi-mir-317:mirbase
Length = 85
Score = 109 bits (55), Expect = 3e-25
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 12 ctgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggt 71
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 11 ctgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacacagctggtggt 70
Query: 72 atccagtggccgttt 86
|||||||||||||||
Sbjct: 71 atccagtggccgttt 85
>36892_dpe-mir-317-1:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13 tgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaacacagctggtggta 72
Query: 73 tccagtggccgttttgca 90
|||| |||||||| ||||
Sbjct: 73 tccaatggccgttctgca 90
>36893_dpe-mir-317-2:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13 tgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaacacagctggtggta 72
Query: 73 tccagtggccgttttgca 90
|||| |||||||| ||||
Sbjct: 73 tccaatggccgttctgca 90
>36976_dps-mir-317:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13 tgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaacacagctggtggta 72
Query: 73 tccagtggccgttttgca 90
|||| |||||||| ||||
Sbjct: 73 tccaatggccgttctgca 90
>36311_dgr-mir-317:mirbase
Length = 90
Score = 89.7 bits (45), Expect = 3e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 22 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 81
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 23 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 82
Query: 82 cgttt 86
|||||
Sbjct: 83 cgttt 87
>36817_dmo-mir-317:mirbase
Length = 86
Score = 69.9 bits (35), Expect = 3e-13
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 11 gctgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtgg 70
|||||||||||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct: 11 gctgggatacaccctgtgctcgctttgagttta-tgtt-gcaagtgaacacagctggtgg 68
Query: 71 tatccagtggccgtt 85
||||||| |||||||
Sbjct: 69 tatccagaggccgtt 83
>35227_aae-mir-317-1:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 67/79 (84%), Gaps = 5/79 (6%)
Strand = Plus / Plus
Query: 5 tcggctgctgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagc 64
|||||| | |||||||||||||||||||||||| || | || | ||||||||||||
Sbjct: 9 tcggctaccgggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagc 64
Query: 65 tggtggtatc-cagtggcc 82
|||||||||| ||||||||
Sbjct: 65 tggtggtatctcagtggcc 83
>35228_aae-mir-317-2:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 67/79 (84%), Gaps = 5/79 (6%)
Strand = Plus / Plus
Query: 5 tcggctgctgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagc 64
|||||| | |||||||||||||||||||||||| || | || | ||||||||||||
Sbjct: 7 tcggctaccgggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagc 62
Query: 65 tggtggtatc-cagtggcc 82
|||||||||| ||||||||
Sbjct: 63 tggtggtatctcagtggcc 81
>36047_cqu-mir-317:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 67/79 (84%), Gaps = 5/79 (6%)
Strand = Plus / Plus
Query: 5 tcggctgctgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagc 64
|||||| | |||||||||||||||||||||||| || | || | ||||||||||||
Sbjct: 9 tcggctaccgggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagc 64
Query: 65 tggtggtatc-cagtggcc 82
|||||||||| ||||||||
Sbjct: 65 tggtggtatctcagtggcc 83
>35087_api-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc 74
||||||||||||||||||||||
Sbjct: 55 agtgaacacagctggtggtatc 76
>35567_bmo-mir-317:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc 74
||||||||||||||||||||||
Sbjct: 53 agtgaacacagctggtggtatc 74
>37801_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc 74
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>37802_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc 74
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>38886_lgi-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>38776_cte-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35032_dpu-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35394_ame-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>37592_ngi-mir-317:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 51 gtgaacacagctggtggtatc 71
>37669_nvi-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtatc 74
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>34987_isc-mir-317:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 gtgaacacagctggtggtat 73
||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtat 79
>35315_aga-mir-317:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc-cagtggccg 83
|||||||||| ||||||||||| |||||||||
Sbjct: 54 agtgaacacatctggtggtatctcagtggccg 85
