miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00720;mir-317;AAEU02000013.1/76417-76507 7245:Drosophila yakuba
Length = 91
Score = 147 bits (74), Expect = 3e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 73 tccagtggccgttt 86
||||||||||||||
Sbjct: 74 tccagtggccgttt 87
>RF00720;mir-317;AANI01014607.1/383695-383607 7244:Drosophila
virilis
Length = 89
Score = 111 bits (56), Expect = 2e-24
Identities = 71/75 (94%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 11 gctgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtgg 70
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 12 gctgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtgg 69
Query: 71 tatccagtggccgtt 85
|||||||||||||||
Sbjct: 70 tatccagtggccgtt 84
>RF00720;mir-317;AAIZ01005964.1/1594-1504 7234:Drosophila
persimilis
Length = 91
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 72
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaacacagctggtggta 73
Query: 73 tccagtggccgttttgca 90
|||| |||||||| ||||
Sbjct: 74 tccaatggccgttctgca 91
>RF00720;mir-317;AAPT01018372.1/102669-102760 7222:Drosophila
grimshawi
Length = 92
Score = 89.7 bits (45), Expect = 6e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 22 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 81
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 24 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 83
Query: 82 cgttt 86
|||||
Sbjct: 84 cgttt 88
>RF00720;mir-317;AAPU01011031.1/18314-18226 7230:Drosophila
mojavensis
Length = 89
Score = 69.9 bits (35), Expect = 5e-12
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 11 gctgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtgg 70
|||||||||||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct: 12 gctgggatacaccctgtgctcgctttgagttta-tgtt-gcaagtgaacacagctggtgg 69
Query: 71 tatccagtggccgtt 85
||||||| |||||||
Sbjct: 70 tatccagaggccgtt 84
>RF00720;mir-317;AAGE02012640.1/88438-88525 7159:Aedes aegypti
(yellow fever mosquito)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 67/79 (84%), Gaps = 5/79 (6%)
Strand = Plus / Plus
Query: 5 tcggctgctgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagc 64
|||||| | |||||||||||||||||||||||| || | || | ||||||||||||
Sbjct: 6 tcggctaccgggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagc 61
Query: 65 tggtggtatc-cagtggcc 82
|||||||||| ||||||||
Sbjct: 62 tggtggtatctcagtggcc 80
>RF00720;mir-317;AAZO01004205.1/873-973 121224:Pediculus humanus
corporis (human body louse)
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 aagtgaacacagctggtggtatc 74
|||||||||||||||||||||||
Sbjct: 62 aagtgaacacagctggtggtatc 84
>RF00720;mir-317;ABLF01040770.1/5816-5924 7029:Acyrthosiphon pisum
(pea aphid)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc 74
||||||||||||||||||||||
Sbjct: 71 agtgaacacagctggtggtatc 92
>RF00720;mir-317;AADK01000441.1/12625-12537 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc 74
||||||||||||||||||||||
Sbjct: 51 agtgaacacagctggtggtatc 72
>RF00720;mir-317;AAJJ01000475.1/38254-38168 7070:Tribolium
castaneum (red flour beetle)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 agtgaacacagctggtggtatc 74
||||||||||||||||||||||
Sbjct: 49 agtgaacacagctggtggtatc 70
