miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 143 bits (72), Expect = 4e-34
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 4 aacgctgtgtgtagctggttgacatcgggtcagatctgttttcctagcatttggtcccct 63
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 aacgctgtgtgtagctggttgacatcgggtcagatctgttttttaagcatttggtcccct 60
Query: 64 tcaaccagctgtagccagtggttg 87
||||||||||||||||||||||||
Sbjct: 61 tcaaccagctgtagccagtggttg 84
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 123 bits (62), Expect = 4e-28
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 4 aacgctgtgtgtagctggttgacatcgggtcagatctgttttcctagcatttggtcccct 63
|||||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 1 aacgctgtgtgtagttggttgacatcgggtcagatctgtttttcgagaatttggtcccct 60
Query: 64 tcaaccagctgtagccagtggttgat 89
|||||||||||||| |||||||||||
Sbjct: 61 tcaaccagctgtag-cagtggttgat 85
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 115 bits (58), Expect = 1e-25
Identities = 84/90 (93%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 tgcaacgctgtgtgtagctggttgacatcgggtcagatctgt-tttcctagcatttggtc 59
||||||||||| |||||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct: 3 tgcaacgctgtatgtagctggttgacatcgggtcagatctatcttttcaagcatttggtc 62
Query: 60 cccttcaaccagctgtagccagtggttgat 89
|||||||||||||||||| |||||||||||
Sbjct: 63 cccttcaaccagctgtag-cagtggttgat 91
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 101 bits (51), Expect = 1e-21
Identities = 80/87 (91%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 4 aacgctgtgtgtagctggttgacatcgggtcagatctgttt-tcctagcatttggtcccc 62
|||||||| |||||||||||||||||||||||||||| ||| | | || |||||||||||
Sbjct: 1 aacgctgtatgtagctggttgacatcgggtcagatctatttattcgagtatttggtcccc 60
Query: 63 ttcaaccagctgtagccagtggttgat 89
||||||||||||||| |||||||||||
Sbjct: 61 ttcaaccagctgtag-cagtggttgat 86
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 87.7 bits (44), Expect = 2e-17
Identities = 72/79 (91%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 13 tgtagctggttgacatcgggtcagatctgttttcct--agcatttggtccccttcaacca 70
|||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 11 tgtagctggttgacatcgggtcagatctatttatttgaagcatttggtccccttcaacca 70
Query: 71 gctgtagccagtggttgat 89
||||||| |||||||||||
Sbjct: 71 gctgtag-cagtggttgat 88
>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 87.7 bits (44), Expect = 2e-17
Identities = 76/84 (90%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 7 gctgtgtgtagctggttgacatcgggtcagatctgtttt-cctagcatttggtccccttc 65
||||| |||||||||||||||||||||||||||| |||| | || ||||||||||||||
Sbjct: 5 gctgtatgtagctggttgacatcgggtcagatctattttatcaagtatttggtccccttc 64
Query: 66 aaccagctgtagccagtggttgat 89
||||||||||| |||||||||||
Sbjct: 65 aaccagctgta-tcagtggttgat 87
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 51 catttggtccccttcaaccagctgtagcc 79
|||||||||||||||||||||||||||||
Sbjct: 34 catttggtccccttcaaccagctgtagcc 62
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 50 gcatttggtccccttcaaccagctgtagc 78
|||||||||||||||||||||||||||||
Sbjct: 66 gcatttggtccccttcaaccagctgtagc 94
>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 42 ttttcctagcatttggtccccttcaaccagctgtag 77
||||| || |||||||||||||||||||||||||||
Sbjct: 42 ttttcatatcatttggtccccttcaaccagctgtag 77
>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
(honey bee)
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 50 gcatttggtccccttcaaccagctgtag 77
||||||||||||||||||||||||||||
Sbjct: 52 gcatttggtccccttcaaccagctgtag 79
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 catttggtccccttcaaccagctgtagc 78
||||||||||||||||||||||||||||
Sbjct: 69 catttggtccccttcaaccagctgtagc 96
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 atttggtccccttcaaccagctgtagc 78
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 atttggtccccttcaaccagctgtagc 78
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 atttggtccccttcaaccagctgtagc 78
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 atttggtccccttcaaccagctgtagc 78
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
humanus corporis (human body louse)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 catttggtccccttcaaccagctgtag 77
|||||||||||||||||||||||||||
Sbjct: 52 catttggtccccttcaaccagctgtag 78
>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 catttggtccccttcaaccagctgt 75
|||||||||||||||||||||||||
Sbjct: 70 catttggtccccttcaaccagctgt 94
>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
scapularis (black-legged tick)
Length = 107
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 catttggtccccttcaaccagctgt 75
|||||||||||||||||||||||||
Sbjct: 69 catttggtccccttcaaccagctgt 93
>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 atttggtccccttcaaccagctgt 75
||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgt 73
>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 atttggtccccttcaaccagctgt 75
||||||||||||||||||||||||
Sbjct: 47 atttggtccccttcaaccagctgt 70
>RF00446;mir-133;AAGJ02035428.1/18887-18799
7668:Strongylocentrotus purpuratus
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 52 atttggtccccttcaaccagctgtagc 78
||||||||||||||||||||| |||||
Sbjct: 52 atttggtccccttcaaccagccgtagc 78
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 atttggtccccttcaaccagctg 74
|||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctg 71
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tttggtccccttcaaccagctg 74
||||||||||||||||||||||
Sbjct: 56 tttggtccccttcaaccagctg 77
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 tttggtccccttcaaccagctgtagc 78
||||||||||||||||||||| ||||
Sbjct: 52 tttggtccccttcaaccagctatagc 77
