miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37519_dya-mir-263a:mirbase
          Length = 90

 Score =  170 bits (86), Expect = 1e-43
 Identities = 89/90 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtg 60
          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1  gatctcggcacagttaatggcactggaagaattcacggggtactttttatacaacccgtg 60

                                        
Query: 61 atctcttagtggcatctatggtgcgagaat 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcgagaat 90




>36405_dme-mir-263a:mirbase
          Length = 94

 Score =  163 bits (82), Expect = 3e-41
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtg 60
          |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 3  gatctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtg 62

                                        
Query: 61 atctcttagtggcatctatggtgcgagaat 90
          ||||||||||||||||||||||||||||||
Sbjct: 63 atctcttagtggcatctatggtgcgagaat 92




>36406_dme-mir-263a:mirbase
          Length = 94

 Score =  163 bits (82), Expect = 3e-41
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtg 60
          |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 3  gatctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtg 62

                                        
Query: 61 atctcttagtggcatctatggtgcgagaat 90
          ||||||||||||||||||||||||||||||
Sbjct: 63 atctcttagtggcatctatggtgcgagaat 92




>37230_dsi-mir-263a:mirbase
          Length = 90

 Score =  163 bits (82), Expect = 3e-41
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtg 60
          |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 1  gatctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtg 60

                                        
Query: 61 atctcttagtggcatctatggtgcgagaat 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcgagaat 90




>37151_dse-mir-263a:mirbase
          Length = 90

 Score =  155 bits (78), Expect = 6e-39
 Identities = 87/90 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtg 60
          ||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 1  gatctcgacacagttaatggcactggaagaattcacggggtaatttttatacaacccgtg 60

                                        
Query: 61 atctcttagtggcatctatggtgcgagaat 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcgagaat 90




>36113_dan-mir-263a:mirbase
          Length = 90

 Score =  143 bits (72), Expect = 2e-35
 Identities = 81/84 (96%)
 Strand = Plus / Plus

                                                                      
Query: 2  atctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtga 61
          ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||
Sbjct: 1  atctcggcacagttaatggcactggaagaattcacggggtaatttctatacaacccgtga 60

                                  
Query: 62 tctcttagtggcatctatggtgcg 85
          ||||||||||||||||||||||||
Sbjct: 61 tctcttagtggcatctatggtgcg 84




>36865_dpe-mir-263a:mirbase
          Length = 89

 Score =  119 bits (60), Expect = 4e-28
 Identities = 76/80 (95%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                      
Query: 6  cggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtgatctc 65
          ||||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||
Sbjct: 6  cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 64

                              
Query: 66 ttagtggcatctatggtgcg 85
          ||||||||||||||||||||
Sbjct: 65 ttagtggcatctatggtgcg 84




>36944_dps-mir-263a:mirbase
          Length = 92

 Score =  119 bits (60), Expect = 4e-28
 Identities = 76/80 (95%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                      
Query: 6  cggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtgatctc 65
          ||||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||
Sbjct: 7  cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 65

                              
Query: 66 ttagtggcatctatggtgcg 85
          ||||||||||||||||||||
Sbjct: 66 ttagtggcatctatggtgcg 85




>37105_dps-mir-3983:mirbase
          Length = 88

 Score =  119 bits (60), Expect = 4e-28
 Identities = 76/80 (95%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                      
Query: 6  cggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtgatctc 65
          ||||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||
Sbjct: 83 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 25

                              
Query: 66 ttagtggcatctatggtgcg 85
          ||||||||||||||||||||
Sbjct: 24 ttagtggcatctatggtgcg 5




>36280_dgr-mir-263a:mirbase
          Length = 89

 Score =  111 bits (56), Expect = 9e-26
 Identities = 78/84 (92%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  atctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtga 61
          ||||||||||||||||||||||||||||||||||||||||  |||| | ||  |||||||
Sbjct: 1  atctcggcacagttaatggcactggaagaattcacggggttattttaacac-gcccgtga 59

                                  
Query: 62 tctcttagtggcatctatggtgcg 85
          ||||||||||||||||||||||||
Sbjct: 60 tctcttagtggcatctatggtgcg 83




>37444_dwi-mir-263a:mirbase
          Length = 91

 Score =  105 bits (53), Expect = 5e-24
 Identities = 78/85 (91%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  atctcggcacagttaatggcactggaagaattcacggggtacttttgataca-acccgtg 60
          ||||||||||||||||||||||||||||||||||||||||  || |   ||| |||||||
Sbjct: 1  atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60

                                   
Query: 61 atctcttagtggcatctatggtgcg 85
          |||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcg 85




>36789_dmo-mir-263a:mirbase
          Length = 89

 Score =  103 bits (52), Expect = 2e-23
 Identities = 77/84 (91%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  atctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtga 61
          ||||||||||||||||||||||||||||||||||||||||  || | | ||  |||||||
Sbjct: 1  atctcggcacagttaatggcactggaagaattcacggggtttttctaacac-gcccgtga 59

                                  
Query: 62 tctcttagtggcatctatggtgcg 85
          ||||||||||||||||||||||||
Sbjct: 60 tctcttagtggcatctatggtgcg 83




>37365_dvi-mir-263a:mirbase
          Length = 89

 Score =  103 bits (52), Expect = 2e-23
 Identities = 77/84 (91%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  atctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtga 61
          ||||||||||||||||||||||||||||||||||||||||  || | | ||  |||||||
Sbjct: 1  atctcggcacagttaatggcactggaagaattcacggggtttttataacac-gcccgtga 59

                                  
Query: 62 tctcttagtggcatctatggtgcg 85
          ||||||||||||||||||||||||
Sbjct: 60 tctcttagtggcatctatggtgcg 83




>34978_isc-mir-263a:mirbase
          Length = 100

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 aatggcactggaagaattcacggggt 41
          ||||||||||||||||||||||||||
Sbjct: 21 aatggcactggaagaattcacggggt 46




>37761_tca-mir-263a:mirbase
          Length = 91

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 aatggcactggaagaattcacggggt 41
          ||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggt 43




>37762_tca-mir-263a:mirbase
          Length = 91

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 aatggcactggaagaattcacggggt 41
          ||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggt 43




>35202_aae-mir-263a:mirbase
          Length = 97

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 taatggcactggaagaattcacggg 39
          |||||||||||||||||||||||||
Sbjct: 13 taatggcactggaagaattcacggg 37




>35297_aga-mir-263:mirbase
          Length = 86

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 taatggcactggaagaattcacggg 39
          |||||||||||||||||||||||||
Sbjct: 13 taatggcactggaagaattcacggg 37




>35377_ame-mir-263:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 aatggcactggaagaattcacgggg 40
          |||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40




>36030_cqu-mir-263:mirbase
          Length = 76

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 taatggcactggaagaattcacggg 39
          |||||||||||||||||||||||||
Sbjct: 8  taatggcactggaagaattcacggg 32




>35019_dpu-mir-263a:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 aatggcactggaagaattcacggg 39
          ||||||||||||||||||||||||
Sbjct: 20 aatggcactggaagaattcacggg 43




>35073_api-mir-263a:mirbase
          Length = 66

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 16 aatggcactggaagaattcacggggtac 43
          |||||||||| |||||||||||||||||
Sbjct: 1  aatggcactgaaagaattcacggggtac 28




>35545_bmo-mir-263a:mirbase
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 aatggcactggaagaattcacggg 39
          ||||||||||||||||||||||||
Sbjct: 19 aatggcactggaagaattcacggg 42



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 55 cccgtgatctcttagtggcatc 76
          ||||||||||||||||||||||
Sbjct: 58 cccgtgatctcttagtggcatc 79




>38872_lgi-mir-183:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 10 acagttaatggcactggaagaattcacgg 38
          ||||| ||||||||||| |||||||||||
Sbjct: 15 acagtgaatggcactggtagaattcacgg 43