miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
Length = 79
Score = 133 bits (67), Expect = 4e-31
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtc 66
|||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtc 60
Query: 67 aggtaaagatgtcgtccgt 85
|||||||||||||||||||
Sbjct: 61 aggtaaagatgtcgtccgt 79
>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
willistoni
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattagattct-tgatttaaataattctaatactgt 65
||||||||||||||||||||||||||||||||| | | | || ||| |||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagattttgtactatagatatctctaatactgt 60
Query: 66 caggtaaagatgtcgtccgt 85
||||||||||||||||||||
Sbjct: 61 caggtaaagatgtcgtccgt 80
>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
corporis (human body louse)
Length = 78
Score = 79.8 bits (40), Expect = 5e-15
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 9 ctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtcag 68
||||| ||||||||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 3 ctgtttacatcttaccgggcagcattagattgat--tttaagtaattctaatactgtcag 60
Query: 69 gtaaagatgtc 79
|||| ||||||
Sbjct: 61 gtaatgatgtc 71
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
gambiae str. PEST
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 8 tctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtca 67
||||||||||||||||||||||||||||||| | | | ||| ||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagatatgtta-tcggatatttctaatactgtca 60
Query: 68 ggtaaagatgtcgtccg 84
|||||||||||||||||
Sbjct: 61 ggtaaagatgtcgtccg 77
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
silkworm)
Length = 77
Score = 67.9 bits (34), Expect = 2e-11
Identities = 66/74 (89%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 11 gttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtcaggt 70
|||| |||||||||||||||||||||| || || | || || |||||||||||||||||
Sbjct: 5 gttcgcatcttaccgggcagcattagagtcctg-tctatatt-ttctaatactgtcaggt 62
Query: 71 aaagatgtcgtccg 84
||||||||||||||
Sbjct: 63 aaagatgtcgtccg 76
>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
bee)
Length = 75
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattagatt 39
|||||||||||||||||||||||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagatt 33
>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
(red flour beetle)
Length = 77
Score = 65.9 bits (33), Expect = 8e-11
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 9 ctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtcag 68
||||| |||||||||||||||||||||||| | |||| ||| |||||||||||||||
Sbjct: 3 ctgttaacatcttaccgggcagcattagat--tacattt-tatacttctaatactgtcag 59
Query: 69 gtaaagatgtcgtccg 84
||||||||||| ||||
Sbjct: 60 gtaaagatgtcctccg 75
>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 ttctaatactgtcaggtaaagatgtc 79
||||||||||||||||||||||||||
Sbjct: 43 ttctaatactgtcaggtaaagatgtc 68
