miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37341_dvi-mir-9b:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctctatggtgtgcgcataatccacagagct 60
|||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
Query: 61 ttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>36765_dmo-mir-9b:mirbase
Length = 89
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctctatggtgtgcgcataatccacagagct 60
||||||||||||| |||||||||||||||||| |||||||||||| || |||| ||||||
Sbjct: 1 tgcatattatttgttctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
Query: 61 ttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||| ||||||
Sbjct: 61 ttattaccaaaaaccaaatggtctttgca 89
>37416_dwi-mir-9b-1:mirbase
Length = 90
Score = 125 bits (63), Expect = 6e-30
Identities = 84/90 (93%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 2 gcatattatttgctctttggtgattttagctctatggtgt--gcgcataatccacagagc 59
|||||||||||| |||||||||||||||||| |||||||| | |||||||||| |||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 60 tttattaccaaaaaccaaatggtttttgca 89
||||||||||||||||||||||||||||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>37417_dwi-mir-9b-2:mirbase
Length = 90
Score = 125 bits (63), Expect = 6e-30
Identities = 84/90 (93%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 2 gcatattatttgctctttggtgattttagctctatggtgt--gcgcataatccacagagc 59
|||||||||||| |||||||||||||||||| |||||||| | |||||||||| |||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 60 tttattaccaaaaaccaaatggtttttgca 89
||||||||||||||||||||||||||||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>36089_dan-mir-9b:mirbase
Length = 88
Score = 113 bits (57), Expect = 2e-26
Identities = 82/89 (92%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctctatggtgtgcgcataatccacagagct 60
|||| |||||||| |||||||||||||||||| |||||||| | |||| |||| ||||||
Sbjct: 1 tgcacattatttgttctttggtgattttagctgtatggtgt-ctcatattccatagagct 59
Query: 61 ttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||||||
Sbjct: 60 ttattaccaaaaaccaaatggtttttgca 88
>36167_der-mir-9b:mirbase
Length = 89
Score = 113 bits (57), Expect = 2e-26
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctctatggtgtgcgcataatccacagagct 60
|||||||||||||||||||||||||||||||| ||||||||| | |||| ||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtatgtgttccatagagct 60
Query: 61 ttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>36349_dme-mir-9b:mirbase
Length = 91
Score = 103 bits (52), Expect = 2e-23
Identities = 82/91 (90%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctctatggtg--tgcgcataatccacagag 58
|||||||||||||||||||||||||||||||| ||||||| | | ||| |||| ||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||| ||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>36350_dme-mir-9b:mirbase
Length = 91
Score = 103 bits (52), Expect = 2e-23
Identities = 82/91 (90%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctctatggtg--tgcgcataatccacagag 58
|||||||||||||||||||||||||||||||| ||||||| | | ||| |||| ||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||| ||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>37127_dse-mir-9b:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctctatggtgtgcgcataatccacagagct 60
||||||||||||| |||||||||||||||||| |||||||| || |||| ||||||
Sbjct: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtattccatagagct 60
Query: 61 ttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||| ||||
Sbjct: 61 ttattaccaaaaaccaaatggtttctgca 89
>37496_dya-mir-9b:mirbase
Length = 91
Score = 95.6 bits (48), Expect = 5e-21
Identities = 81/91 (89%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctctatggtgtgcgca--taatccacagag 58
|||||||||||||||||||||||||||||||| ||||||||| | | |||| ||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||| ||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>36838_dpe-mir-9b:mirbase
Length = 91
Score = 69.9 bits (35), Expect = 3e-13
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctctatggtgt-gcgcata-atccacagag 58
|||| |||||||| |||||||||||||||||| |||||||| || | ||||| ||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttttgca 89
|||||| ||||||| ||||||||||||||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
>36914_dps-mir-9b:mirbase
Length = 91
Score = 69.9 bits (35), Expect = 3e-13
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctctatggtgt-gcgcata-atccacagag 58
|||| |||||||| |||||||||||||||||| |||||||| || | ||||| ||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttttgca 89
|||||| ||||||| ||||||||||||||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
