miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37344_dvi-mir-11:mirbase
Length = 81
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 7 tcaagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacagtctgag 66
||||||||| | ||||||||||||||||||| | || || ||| ||||||||||||||||
Sbjct: 8 tcaagaactttttctgtgacttgcgtgaactcttatatgcaaaccgcatcacagtctgag 67
Query: 67 ttcttgctgagcg 79
|||||||| ||||
Sbjct: 68 ttcttgcttagcg 80
>37421_dwi-mir-11:mirbase
Length = 82
Score = 65.9 bits (33), Expect = 4e-12
Identities = 67/78 (85%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 6 gtcaagaactctctctgtgacttgcgtgaactttc----atgtgaaaatcgcatcacagt 61
||||||| ||||||||||||| ||||||| ||| || |||||| |||||||||||
Sbjct: 5 gtcaagatctctctctgtgacctgcgtgagatttatcatatatgaaaaccgcatcacagt 64
Query: 62 ctgagttcttgctgagcg 79
||||||||||||||||||
Sbjct: 65 ctgagttcttgctgagcg 82
>36170_der-mir-11:mirbase
Length = 75
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 51 cgcatcacagtctgagttcttgctgagcg 79
|||||||||||||||||||||||||||||
Sbjct: 46 cgcatcacagtctgagttcttgctgagcg 74
>37499_dya-mir-11:mirbase
Length = 75
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 51 cgcatcacagtctgagttcttgctgagcg 79
|||||||||||||||||||||||||||||
Sbjct: 46 cgcatcacagtctgagttcttgctgagcg 74
>36768_dmo-mir-11:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 8 caagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacagtctgagt 67
|||||||| | |||||||| |||||||| | || || ||| |||||||||||||||||
Sbjct: 9 caagaactttttctgtgacctgcgtgaattcctatatgcaaaccgcatcacagtctgagt 68
Query: 68 tcttgctgagcg 79
||||||| ||||
Sbjct: 69 tcttgcttagcg 80
>36092_dan-mir-11:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 1e-08
Identities = 60/70 (85%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 8 caagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacagtctgagt 67
|||||||||||||||||||||| || |||| | |||| || |||||||||||||||
Sbjct: 9 caagaactctctctgtgacttgtgtc--ctttttttcgaaactcacatcacagtctgagt 66
Query: 68 tcttgctgag 77
||||||||||
Sbjct: 67 tcttgctgag 76
>36355_dme-mir-11:mirbase
Length = 75
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 cgcatcacagtctgagttcttgctgag 77
|||||||||||||||||||||||||||
Sbjct: 46 cgcatcacagtctgagttcttgctgag 72
>36356_dme-mir-11:mirbase
Length = 75
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 cgcatcacagtctgagttcttgctgag 77
|||||||||||||||||||||||||||
Sbjct: 46 cgcatcacagtctgagttcttgctgag 72
>36841_dpe-mir-11:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 catcacagtctgagttcttgctgagcg 79
|||||||||||||||||||||||||||
Sbjct: 45 catcacagtctgagttcttgctgagcg 71
>36917_dps-mir-11:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 catcacagtctgagttcttgctgagcg 79
|||||||||||||||||||||||||||
Sbjct: 45 catcacagtctgagttcttgctgagcg 71
>37130_dse-mir-11:mirbase
Length = 75
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 cgcatcacagtctgagttcttgctgag 77
|||||||||||||||||||||||||||
Sbjct: 46 cgcatcacagtctgagttcttgctgag 72
>37206_dsi-mir-11:mirbase
Length = 75
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 cgcatcacagtctgagttcttgctgag 77
|||||||||||||||||||||||||||
Sbjct: 46 cgcatcacagtctgagttcttgctgag 72
>35178_aae-mir-11:mirbase
Length = 114
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 aaatcgcatcacagtctgagttcttgct 74
||||| ||||||||||||||||||||||
Sbjct: 61 aaatcacatcacagtctgagttcttgct 88
>35279_aga-mir-11:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 catcacagtctgagttcttgct 74
||||||||||||||||||||||
Sbjct: 63 catcacagtctgagttcttgct 84
>36009_cqu-mir-11:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 catcacagtctgagttcttgct 74
||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgct 73
