miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00813;mir-11;AAPT01019388.1/147488-147568 7222:Drosophila
grimshawi
Length = 81
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 cactcgtcaagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cactcgtcaagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacag 61
Query: 61 tctgagttcttgctgagcg 79
|||||||||||||||||||
Sbjct: 62 tctgagttcttgctgagcg 80
>RF00813;mir-11;AANI01017139.1/215647-215727 7244:Drosophila
virilis
Length = 81
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 7 tcaagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacagtctgag 66
||||||||| | ||||||||||||||||||| | || || ||| ||||||||||||||||
Sbjct: 8 tcaagaactttttctgtgacttgcgtgaactcttatatgcaaaccgcatcacagtctgag 67
Query: 67 ttcttgctgagcg 79
|||||||| ||||
Sbjct: 68 ttcttgcttagcg 80
>RF00813;mir-11;AAQB01008624.1/142840-142924 7260:Drosophila
willistoni
Length = 85
Score = 65.9 bits (33), Expect = 7e-11
Identities = 67/78 (85%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 6 gtcaagaactctctctgtgacttgcgtgaactttc----atgtgaaaatcgcatcacagt 61
||||||| ||||||||||||| ||||||| ||| || |||||| |||||||||||
Sbjct: 7 gtcaagatctctctctgtgacctgcgtgagatttatcatatatgaaaaccgcatcacagt 66
Query: 62 ctgagttcttgctgagcg 79
||||||||||||||||||
Sbjct: 67 ctgagttcttgctgagcg 84
>RF00813;mir-11;AAPU01010953.1/16155-16075 7230:Drosophila
mojavensis
Length = 81
Score = 56.0 bits (28), Expect = 7e-08
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 8 caagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacagtctgagt 67
|||||||| | |||||||| |||||||| | || || ||| |||||||||||||||||
Sbjct: 9 caagaactttttctgtgacctgcgtgaattcctatatgcaaaccgcatcacagtctgagt 68
Query: 68 tcttgctgagcg 79
||||||| ||||
Sbjct: 69 tcttgcttagcg 80
>RF00813;mir-11;AAFS01000036.1/6151-6079 46245:Drosophila
pseudoobscura pseudoobscura
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 catcacagtctgagttcttgctgagcg 79
|||||||||||||||||||||||||||
Sbjct: 46 catcacagtctgagttcttgctgagcg 72
>RF00813;mir-11;AAPP01019528.1/447265-447343 7217:Drosophila
ananassae
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/70 (85%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 8 caagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacagtctgagt 67
|||||||||||||||||||||| || |||| | |||| || |||||||||||||||
Sbjct: 9 caagaactctctctgtgacttgtgtc--ctttttttcgaaactcacatcacagtctgagt 66
Query: 68 tcttgctgag 77
||||||||||
Sbjct: 67 tcttgctgag 76
>RF00813;mir-11;AAGE02023911.1/46406-46483 7159:Aedes aegypti
(yellow fever mosquito)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 aaatcgcatcacagtctgagttcttgct 74
||||| ||||||||||||||||||||||
Sbjct: 45 aaatcacatcacagtctgagttcttgct 72
>RF00813;mir-11;AAWU01011517.1/5912-5834 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 catcacagtctgagttcttgct 74
||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgct 73
>RF00813;mir-11;ABKP02017914.1/853-942 377271:Anopheles gambiae M
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 catcacagtctgagttcttgct 74
||||||||||||||||||||||
Sbjct: 63 catcacagtctgagttcttgct 84