miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00813;mir-11;AAPT01019388.1/147488-147568 7222:Drosophila
          grimshawi
          Length = 81

 Score =  157 bits (79), Expect = 2e-38
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cactcgtcaagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacag 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  cactcgtcaagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacag 61

                             
Query: 61 tctgagttcttgctgagcg 79
          |||||||||||||||||||
Sbjct: 62 tctgagttcttgctgagcg 80




>RF00813;mir-11;AANI01017139.1/215647-215727 7244:Drosophila
          virilis
          Length = 81

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                      
Query: 7  tcaagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacagtctgag 66
          ||||||||| | ||||||||||||||||||| | || || ||| ||||||||||||||||
Sbjct: 8  tcaagaactttttctgtgacttgcgtgaactcttatatgcaaaccgcatcacagtctgag 67

                       
Query: 67 ttcttgctgagcg 79
          |||||||| ||||
Sbjct: 68 ttcttgcttagcg 80




>RF00813;mir-11;AAQB01008624.1/142840-142924 7260:Drosophila
          willistoni
          Length = 85

 Score = 65.9 bits (33), Expect = 7e-11
 Identities = 67/78 (85%), Gaps = 4/78 (5%)
 Strand = Plus / Plus

                                                                      
Query: 6  gtcaagaactctctctgtgacttgcgtgaactttc----atgtgaaaatcgcatcacagt 61
          ||||||| ||||||||||||| |||||||  |||     || |||||| |||||||||||
Sbjct: 7  gtcaagatctctctctgtgacctgcgtgagatttatcatatatgaaaaccgcatcacagt 66

                            
Query: 62 ctgagttcttgctgagcg 79
          ||||||||||||||||||
Sbjct: 67 ctgagttcttgctgagcg 84




>RF00813;mir-11;AAPU01010953.1/16155-16075 7230:Drosophila
          mojavensis
          Length = 81

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                      
Query: 8  caagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacagtctgagt 67
          |||||||| | |||||||| |||||||| |   || || ||| |||||||||||||||||
Sbjct: 9  caagaactttttctgtgacctgcgtgaattcctatatgcaaaccgcatcacagtctgagt 68

                      
Query: 68 tcttgctgagcg 79
          ||||||| ||||
Sbjct: 69 tcttgcttagcg 80




>RF00813;mir-11;AAFS01000036.1/6151-6079 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 73

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 53 catcacagtctgagttcttgctgagcg 79
          |||||||||||||||||||||||||||
Sbjct: 46 catcacagtctgagttcttgctgagcg 72




>RF00813;mir-11;AAPP01019528.1/447265-447343 7217:Drosophila
          ananassae
          Length = 79

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 60/70 (85%), Gaps = 2/70 (2%)
 Strand = Plus / Plus

                                                                      
Query: 8  caagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacagtctgagt 67
          |||||||||||||||||||||| ||   ||||  |  |||| || |||||||||||||||
Sbjct: 9  caagaactctctctgtgacttgtgtc--ctttttttcgaaactcacatcacagtctgagt 66

                    
Query: 68 tcttgctgag 77
          ||||||||||
Sbjct: 67 tcttgctgag 76




>RF00813;mir-11;AAGE02023911.1/46406-46483 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 78

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 47 aaatcgcatcacagtctgagttcttgct 74
          ||||| ||||||||||||||||||||||
Sbjct: 45 aaatcacatcacagtctgagttcttgct 72




>RF00813;mir-11;AAWU01011517.1/5912-5834 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 53 catcacagtctgagttcttgct 74
          ||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgct 73




>RF00813;mir-11;ABKP02017914.1/853-942 377271:Anopheles gambiae M
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 53 catcacagtctgagttcttgct 74
          ||||||||||||||||||||||
Sbjct: 63 catcacagtctgagttcttgct 84