miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37347_dvi-mir-13b-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccatgtcgttaaaatgcctgtgaccttatgtattttatatcatatcacagccattttgac 60
Query: 61 gagtttgg 68
||||||||
Sbjct: 61 gagtttgg 68
>36095_dan-mir-13b-1:mirbase
Length = 69
Score = 89.7 bits (45), Expect = 2e-19
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ccatgtcgttaaaatgcttgtgaccttatgtattt-tatatcatatcacagccattttga 59
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ccatgtcgttaaaaggcttgtgaccttatgtatttcgcaatcatatcacagccattttga 60
Query: 60 cgagtttgg 68
|||||||||
Sbjct: 61 cgagtttgg 69
>36844_dpe-mir-13b-1:mirbase
Length = 69
Score = 89.7 bits (45), Expect = 2e-19
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ccatgtcgttaaaatgcttgtgaccttatgtatt-ttatatcatatcacagccattttga 59
|||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||
Sbjct: 1 ccatgtcgttaaaatgtttgtgaccttatgtactcttgaatcatatcacagccattttga 60
Query: 60 cgagtttgg 68
|||||||||
Sbjct: 61 cgagtttgg 69
>36920_dps-mir-13b-1:mirbase
Length = 69
Score = 89.7 bits (45), Expect = 2e-19
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ccatgtcgttaaaatgcttgtgaccttatgtatt-ttatatcatatcacagccattttga 59
|||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||
Sbjct: 1 ccatgtcgttaaaatgtttgtgaccttatgtactcttgaatcatatcacagccattttga 60
Query: 60 cgagtttgg 68
|||||||||
Sbjct: 61 cgagtttgg 69
>36173_der-mir-13b-1:mirbase
Length = 68
Score = 87.7 bits (44), Expect = 9e-19
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct: 1 ccatgtcgttaaaatgtttgtgaacttatgtattcgcaatcatatcacagccattttgac 60
Query: 61 gagtttgg 68
||||||||
Sbjct: 61 gagtttgg 68
>36361_dme-mir-13b-1:mirbase
Length = 68
Score = 87.7 bits (44), Expect = 9e-19
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct: 1 ccatgtcgttaaaatgtttgtgaacttatgtattcacaatcatatcacagccattttgac 60
Query: 61 gagtttgg 68
||||||||
Sbjct: 61 gagtttgg 68
>36362_dme-mir-13b-1:mirbase
Length = 68
Score = 87.7 bits (44), Expect = 9e-19
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct: 1 ccatgtcgttaaaatgtttgtgaacttatgtattcacaatcatatcacagccattttgac 60
Query: 61 gagtttgg 68
||||||||
Sbjct: 61 gagtttgg 68
>36771_dmo-mir-13b-1:mirbase
Length = 68
Score = 87.7 bits (44), Expect = 9e-19
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
|||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1 ccatgtcgttaaaatgtctgtgaccgtatgtattcactatcatatcacagccattttgac 60
Query: 61 gagtttgg 68
||||||||
Sbjct: 61 gagtttgg 68
>37133_dse-mir-13b-1:mirbase
Length = 68
Score = 87.7 bits (44), Expect = 9e-19
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct: 1 ccatgtcgttaaaatgtttgtgaacttatgtattcgcaatcatatcacagccattttgac 60
Query: 61 gagtttgg 68
||||||||
Sbjct: 61 gagtttgg 68
>37209_dsi-mir-13b-1:mirbase
Length = 68
Score = 87.7 bits (44), Expect = 9e-19
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct: 1 ccatgtcgttaaaatgtttgtgaacttatgtattcgcaatcatatcacagccattttgac 60
Query: 61 gagtttgg 68
||||||||
Sbjct: 61 gagtttgg 68
>37501_dya-mir-13b-1:mirbase
Length = 68
Score = 87.7 bits (44), Expect = 9e-19
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct: 1 ccatgtcgttaaaatgtttgtgaacttatgtattcgcaatcatatcacagccattttgac 60
Query: 61 gagtttgg 68
||||||||
Sbjct: 61 gagtttgg 68
>36096_dan-mir-13b-2:mirbase
Length = 66
Score = 60.0 bits (30), Expect = 2e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 30 gtattttatatcatatcacagccattttgacgagtttg 67
|||||| || ||||||||||||||||||||||||||||
Sbjct: 29 gtatttgatgtcatatcacagccattttgacgagtttg 66
>36772_dmo-mir-13b-2:mirbase
Length = 67
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 38 tatcatatcacagccattttgacgagttt 66
|||||||||||||||||||||||||||||
Sbjct: 39 tatcatatcacagccattttgacgagttt 67
>37424_dwi-mir-13b-1:mirbase
Length = 71
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttgg 68
|||||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtttgg 71
>35281_aga-mir-13b:mirbase
Length = 94
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 53 tcatatcacagccattttgacgagtttg 80
>36011_cqu-mir-13:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 52 tcatatcacagccattttgacgagtttg 79
>36174_der-mir-13b-2:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>36262_dgr-mir-13b-2:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 46 tcatatcacagccattttgacgagtttg 73
>36363_dme-mir-13b-2:mirbase
Length = 70
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtttg 70
>36364_dme-mir-13b-2:mirbase
Length = 70
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtttg 70
>36921_dps-mir-13b-2:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 42 tcatatcacagccattttgacgagtttg 69
>37134_dse-mir-13b-2:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>37210_dsi-mir-13b-2:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>37348_dvi-mir-13b-2:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 46 tcatatcacagccattttgacgagtttg 73
>37502_dya-mir-13b-2:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>36845_dpe-mir-13b-2:mirbase
Length = 66
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>35180_aae-mir-13:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtt 65
||||||||||||||||||||||||||
Sbjct: 51 tcatatcacagccattttgacgagtt 76
>37425_dwi-mir-13b-2:mirbase
Length = 67
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtt 65
||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtt 66
>37713_tca-mir-13b:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 43 tatcacagccattttgacgagtttgg 68
||||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttgg 71
>37714_tca-mir-13b:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 43 tatcacagccattttgacgagtttgg 68
||||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttgg 71
>36843_dpe-mir-13a:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 atcatatcacagccattttgacgagttt 66
||||||||||||||||||||| ||||||
Sbjct: 43 atcatatcacagccattttgatgagttt 70
>36919_dps-mir-13a:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 atcatatcacagccattttgacgagttt 66
||||||||||||||||||||| ||||||
Sbjct: 43 atcatatcacagccattttgatgagttt 70
>36094_dan-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36172_der-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36260_dgr-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36359_dme-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36360_dme-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36770_dmo-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>37132_dse-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>37208_dsi-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>37346_dvi-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>37423_dwi-mir-13a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 48 tcatatcacagccattttgatgagttt 74
>37500_dya-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>35352_ame-mir-13a:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttgg 68
|||||||||||||||||||| ||| ||||
Sbjct: 61 tcatatcacagccattttgatgagcttgg 89
>37572_ngi-mir-13a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 41 catatcacagccattttgacgagtttgg 68
||||||||||||||||||| ||| ||||
Sbjct: 49 catatcacagccattttgatgagcttgg 76
>37606_nlo-mir-13a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 41 catatcacagccattttgacgagtttgg 68
||||||||||||||||||| ||| ||||
Sbjct: 49 catatcacagccattttgatgagcttgg 76
>37639_nvi-mir-13a:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 41 catatcacagccattttgacgagtttgg 68
||||||||||||||||||| ||| ||||
Sbjct: 65 catatcacagccattttgatgagcttgg 92
>37689_tca-mir-2b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tttatatcatatcacagcca 53
||||||||||||||||||||
Sbjct: 41 tttatatcatatcacagcca 60
>37690_tca-mir-2b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tttatatcatatcacagcca 53
||||||||||||||||||||
Sbjct: 41 tttatatcatatcacagcca 60
>35527_bmo-mir-13b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 7e-04
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 40 tcatatcacagcca-ttttgacgagtt 65
|||||||||||||| ||||||||||||
Sbjct: 45 tcatatcacagccatttttgacgagtt 71
>37640_nvi-mir-13b:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 7e-04
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 40 tcatatcacagcca-ttttgacgagtt 65
|||||||||||||| ||||||||||||
Sbjct: 49 tcatatcacagccatttttgacgagtt 75
