miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37347_dvi-mir-13b-1:mirbase
          Length = 68

 Score =  127 bits (64), Expect = 1e-30
 Identities = 67/68 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
          ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ccatgtcgttaaaatgcctgtgaccttatgtattttatatcatatcacagccattttgac 60

                  
Query: 61 gagtttgg 68
          ||||||||
Sbjct: 61 gagtttgg 68




>36095_dan-mir-13b-1:mirbase
          Length = 69

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 64/69 (92%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccatgtcgttaaaatgcttgtgaccttatgtattt-tatatcatatcacagccattttga 59
          |||||||||||||| ||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 1  ccatgtcgttaaaaggcttgtgaccttatgtatttcgcaatcatatcacagccattttga 60

                   
Query: 60 cgagtttgg 68
          |||||||||
Sbjct: 61 cgagtttgg 69




>36844_dpe-mir-13b-1:mirbase
          Length = 69

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 64/69 (92%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccatgtcgttaaaatgcttgtgaccttatgtatt-ttatatcatatcacagccattttga 59
          |||||||||||||||| ||||||||||||||| | ||  |||||||||||||||||||||
Sbjct: 1  ccatgtcgttaaaatgtttgtgaccttatgtactcttgaatcatatcacagccattttga 60

                   
Query: 60 cgagtttgg 68
          |||||||||
Sbjct: 61 cgagtttgg 69




>36920_dps-mir-13b-1:mirbase
          Length = 69

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 64/69 (92%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccatgtcgttaaaatgcttgtgaccttatgtatt-ttatatcatatcacagccattttga 59
          |||||||||||||||| ||||||||||||||| | ||  |||||||||||||||||||||
Sbjct: 1  ccatgtcgttaaaatgtttgtgaccttatgtactcttgaatcatatcacagccattttga 60

                   
Query: 60 cgagtttgg 68
          |||||||||
Sbjct: 61 cgagtttgg 69




>36173_der-mir-13b-1:mirbase
          Length = 68

 Score = 87.7 bits (44), Expect = 9e-19
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
          |||||||||||||||| |||||| ||||||||||    ||||||||||||||||||||||
Sbjct: 1  ccatgtcgttaaaatgtttgtgaacttatgtattcgcaatcatatcacagccattttgac 60

                  
Query: 61 gagtttgg 68
          ||||||||
Sbjct: 61 gagtttgg 68




>36361_dme-mir-13b-1:mirbase
          Length = 68

 Score = 87.7 bits (44), Expect = 9e-19
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
          |||||||||||||||| |||||| ||||||||||    ||||||||||||||||||||||
Sbjct: 1  ccatgtcgttaaaatgtttgtgaacttatgtattcacaatcatatcacagccattttgac 60

                  
Query: 61 gagtttgg 68
          ||||||||
Sbjct: 61 gagtttgg 68




>36362_dme-mir-13b-1:mirbase
          Length = 68

 Score = 87.7 bits (44), Expect = 9e-19
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
          |||||||||||||||| |||||| ||||||||||    ||||||||||||||||||||||
Sbjct: 1  ccatgtcgttaaaatgtttgtgaacttatgtattcacaatcatatcacagccattttgac 60

                  
Query: 61 gagtttgg 68
          ||||||||
Sbjct: 61 gagtttgg 68




>36771_dmo-mir-13b-1:mirbase
          Length = 68

 Score = 87.7 bits (44), Expect = 9e-19
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
          ||||||||||||||||  ||||||| ||||||||   |||||||||||||||||||||||
Sbjct: 1  ccatgtcgttaaaatgtctgtgaccgtatgtattcactatcatatcacagccattttgac 60

                  
Query: 61 gagtttgg 68
          ||||||||
Sbjct: 61 gagtttgg 68




>37133_dse-mir-13b-1:mirbase
          Length = 68

 Score = 87.7 bits (44), Expect = 9e-19
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
          |||||||||||||||| |||||| ||||||||||    ||||||||||||||||||||||
Sbjct: 1  ccatgtcgttaaaatgtttgtgaacttatgtattcgcaatcatatcacagccattttgac 60

                  
Query: 61 gagtttgg 68
          ||||||||
Sbjct: 61 gagtttgg 68




>37209_dsi-mir-13b-1:mirbase
          Length = 68

 Score = 87.7 bits (44), Expect = 9e-19
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
          |||||||||||||||| |||||| ||||||||||    ||||||||||||||||||||||
Sbjct: 1  ccatgtcgttaaaatgtttgtgaacttatgtattcgcaatcatatcacagccattttgac 60

                  
Query: 61 gagtttgg 68
          ||||||||
Sbjct: 61 gagtttgg 68




>37501_dya-mir-13b-1:mirbase
          Length = 68

 Score = 87.7 bits (44), Expect = 9e-19
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccatgtcgttaaaatgcttgtgaccttatgtattttatatcatatcacagccattttgac 60
          |||||||||||||||| |||||| ||||||||||    ||||||||||||||||||||||
Sbjct: 1  ccatgtcgttaaaatgtttgtgaacttatgtattcgcaatcatatcacagccattttgac 60

                  
Query: 61 gagtttgg 68
          ||||||||
Sbjct: 61 gagtttgg 68




>36096_dan-mir-13b-2:mirbase
          Length = 66

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 30 gtattttatatcatatcacagccattttgacgagtttg 67
          |||||| || ||||||||||||||||||||||||||||
Sbjct: 29 gtatttgatgtcatatcacagccattttgacgagtttg 66




>36772_dmo-mir-13b-2:mirbase
          Length = 67

 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 38 tatcatatcacagccattttgacgagttt 66
          |||||||||||||||||||||||||||||
Sbjct: 39 tatcatatcacagccattttgacgagttt 67




>37424_dwi-mir-13b-1:mirbase
          Length = 71

 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 40 tcatatcacagccattttgacgagtttgg 68
          |||||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtttgg 71




>35281_aga-mir-13b:mirbase
          Length = 94

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 53 tcatatcacagccattttgacgagtttg 80




>36011_cqu-mir-13:mirbase
          Length = 82

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 52 tcatatcacagccattttgacgagtttg 79




>36174_der-mir-13b-2:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68




>36262_dgr-mir-13b-2:mirbase
          Length = 73

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 46 tcatatcacagccattttgacgagtttg 73




>36363_dme-mir-13b-2:mirbase
          Length = 70

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtttg 70




>36364_dme-mir-13b-2:mirbase
          Length = 70

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtttg 70




>36921_dps-mir-13b-2:mirbase
          Length = 69

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 42 tcatatcacagccattttgacgagtttg 69




>37134_dse-mir-13b-2:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68




>37210_dsi-mir-13b-2:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68




>37348_dvi-mir-13b-2:mirbase
          Length = 73

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 46 tcatatcacagccattttgacgagtttg 73




>37502_dya-mir-13b-2:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 40 tcatatcacagccattttgacgagtttg 67
          ||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68




>36845_dpe-mir-13b-2:mirbase
          Length = 66

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>35180_aae-mir-13:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 tcatatcacagccattttgacgagtt 65
          ||||||||||||||||||||||||||
Sbjct: 51 tcatatcacagccattttgacgagtt 76




>37425_dwi-mir-13b-2:mirbase
          Length = 67

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 tcatatcacagccattttgacgagtt 65
          ||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtt 66




>37713_tca-mir-13b:mirbase
          Length = 74

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 43 tatcacagccattttgacgagtttgg 68
          ||||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttgg 71




>37714_tca-mir-13b:mirbase
          Length = 74

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 43 tatcacagccattttgacgagtttgg 68
          ||||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttgg 71




>36843_dpe-mir-13a:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 39 atcatatcacagccattttgacgagttt 66
          ||||||||||||||||||||| ||||||
Sbjct: 43 atcatatcacagccattttgatgagttt 70




>36919_dps-mir-13a:mirbase
          Length = 74

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 39 atcatatcacagccattttgacgagttt 66
          ||||||||||||||||||||| ||||||
Sbjct: 43 atcatatcacagccattttgatgagttt 70




>36094_dan-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70




>36172_der-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>36260_dgr-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70




>36359_dme-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>36360_dme-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>36770_dmo-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70




>37132_dse-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>37208_dsi-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>37346_dvi-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70




>37423_dwi-mir-13a:mirbase
          Length = 78

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 48 tcatatcacagccattttgatgagttt 74




>37500_dya-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagccattttgacgagttt 66
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>35352_ame-mir-13a:mirbase
          Length = 100

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 40 tcatatcacagccattttgacgagtttgg 68
          |||||||||||||||||||| ||| ||||
Sbjct: 61 tcatatcacagccattttgatgagcttgg 89




>37572_ngi-mir-13a:mirbase
          Length = 85

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 41 catatcacagccattttgacgagtttgg 68
          ||||||||||||||||||| ||| ||||
Sbjct: 49 catatcacagccattttgatgagcttgg 76




>37606_nlo-mir-13a:mirbase
          Length = 85

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 41 catatcacagccattttgacgagtttgg 68
          ||||||||||||||||||| ||| ||||
Sbjct: 49 catatcacagccattttgatgagcttgg 76




>37639_nvi-mir-13a:mirbase
          Length = 103

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 41 catatcacagccattttgacgagtttgg 68
          ||||||||||||||||||| ||| ||||
Sbjct: 65 catatcacagccattttgatgagcttgg 92




>37689_tca-mir-2b:mirbase
          Length = 85

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 34 tttatatcatatcacagcca 53
          ||||||||||||||||||||
Sbjct: 41 tttatatcatatcacagcca 60




>37690_tca-mir-2b:mirbase
          Length = 85

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 34 tttatatcatatcacagcca 53
          ||||||||||||||||||||
Sbjct: 41 tttatatcatatcacagcca 60




>35527_bmo-mir-13b:mirbase
          Length = 80

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagcca-ttttgacgagtt 65
          |||||||||||||| ||||||||||||
Sbjct: 45 tcatatcacagccatttttgacgagtt 71




>37640_nvi-mir-13b:mirbase
          Length = 92

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 40 tcatatcacagcca-ttttgacgagtt 65
          |||||||||||||| ||||||||||||
Sbjct: 49 tcatatcacagccatttttgacgagtt 75