miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37348_dvi-mir-13b-2:mirbase
          Length = 73

 Score =  113 bits (57), Expect = 2e-26
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttggcgcgtcaaattgactgtgagctatgttgttgcagttgtaattcatatcacagccat 60
          ||||||||||||| ||||||||||||||||||||||| |||  |||||||||||||||||
Sbjct: 1  ttggcgcgtcaaaatgactgtgagctatgttgttgcatttgccattcatatcacagccat 60

                       
Query: 61 tttgacgagtttg 73
          |||||||||||||
Sbjct: 61 tttgacgagtttg 73




>36011_cqu-mir-13:mirbase
          Length = 82

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 44 attcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||||
Sbjct: 50 attcatatcacagccattttgacgagtttg 79




>36772_dmo-mir-13b-2:mirbase
          Length = 67

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 62/69 (89%), Gaps = 4/69 (5%)
 Strand = Plus / Plus

                                                                      
Query: 4  gcgcgtcaaattgactgtgagctatgttgttgcagttgtaattcatatcacagccatttt 63
          ||||||||||||||||||||||||||||  || || | ||  ||||||||||||||||||
Sbjct: 3  gcgcgtcaaattgactgtgagctatgtttatg-agat-ta--tcatatcacagccatttt 58

                   
Query: 64 gacgagttt 72
          |||||||||
Sbjct: 59 gacgagttt 67




>37424_dwi-mir-13b-1:mirbase
          Length = 71

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 44 attcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||||
Sbjct: 41 attcatatcacagccattttgacgagtttg 70




>35180_aae-mir-13:mirbase
          Length = 84

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 43 aattcatatcacagccattttgacgagtt 71
          |||||||||||||||||||||||||||||
Sbjct: 48 aattcatatcacagccattttgacgagtt 76




>35281_aga-mir-13b:mirbase
          Length = 94

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 ttcatatcacagccattttgacgagtttg 73
          |||||||||||||||||||||||||||||
Sbjct: 52 ttcatatcacagccattttgacgagtttg 80




>36174_der-mir-13b-2:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 ttcatatcacagccattttgacgagtttg 73
          |||||||||||||||||||||||||||||
Sbjct: 40 ttcatatcacagccattttgacgagtttg 68




>36363_dme-mir-13b-2:mirbase
          Length = 70

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 ttcatatcacagccattttgacgagtttg 73
          |||||||||||||||||||||||||||||
Sbjct: 42 ttcatatcacagccattttgacgagtttg 70




>36364_dme-mir-13b-2:mirbase
          Length = 70

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 ttcatatcacagccattttgacgagtttg 73
          |||||||||||||||||||||||||||||
Sbjct: 42 ttcatatcacagccattttgacgagtttg 70




>37134_dse-mir-13b-2:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 ttcatatcacagccattttgacgagtttg 73
          |||||||||||||||||||||||||||||
Sbjct: 40 ttcatatcacagccattttgacgagtttg 68




>37210_dsi-mir-13b-2:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 ttcatatcacagccattttgacgagtttg 73
          |||||||||||||||||||||||||||||
Sbjct: 40 ttcatatcacagccattttgacgagtttg 68




>37425_dwi-mir-13b-2:mirbase
          Length = 67

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 43 aattcatatcacagccattttgacgagtt 71
          |||||||||||||||||||||||||||||
Sbjct: 38 aattcatatcacagccattttgacgagtt 66




>37502_dya-mir-13b-2:mirbase
          Length = 68

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 45 ttcatatcacagccattttgacgagtttg 73
          |||||||||||||||||||||||||||||
Sbjct: 40 ttcatatcacagccattttgacgagtttg 68




>36095_dan-mir-13b-1:mirbase
          Length = 69

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68




>36096_dan-mir-13b-2:mirbase
          Length = 66

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 39 tcatatcacagccattttgacgagtttg 66




>36173_der-mir-13b-1:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>36261_dgr-mir-13b-1:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>36361_dme-mir-13b-1:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>36362_dme-mir-13b-1:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>36771_dmo-mir-13b-1:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>36844_dpe-mir-13b-1:mirbase
          Length = 69

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68




>36920_dps-mir-13b-1:mirbase
          Length = 69

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68




>36921_dps-mir-13b-2:mirbase
          Length = 69

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 42 tcatatcacagccattttgacgagtttg 69




>37133_dse-mir-13b-1:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>37209_dsi-mir-13b-1:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>37347_dvi-mir-13b-1:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>37501_dya-mir-13b-1:mirbase
          Length = 68

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 46 tcatatcacagccattttgacgagtttg 73
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>36845_dpe-mir-13b-2:mirbase
          Length = 66

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66




>37713_tca-mir-13b:mirbase
          Length = 74

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 49 tatcacagccattttgacgagtttg 73
          |||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttg 70




>37714_tca-mir-13b:mirbase
          Length = 74

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 49 tatcacagccattttgacgagtttg 73
          |||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttg 70




>36094_dan-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70




>36172_der-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>36260_dgr-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70




>36359_dme-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>36360_dme-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>36770_dmo-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70




>36843_dpe-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70




>36919_dps-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70




>37132_dse-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>37208_dsi-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>37346_dvi-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70




>37423_dwi-mir-13a:mirbase
          Length = 78

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 48 tcatatcacagccattttgatgagttt 74




>37500_dya-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagccattttgacgagttt 72
          |||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71




>35352_ame-mir-13a:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 46 tcatatcacagccattttga 65
          ||||||||||||||||||||
Sbjct: 61 tcatatcacagccattttga 80




>37640_nvi-mir-13b:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 45 ttcatatcacagcca-ttttgacgagtt 71
          ||||||||||||||| ||||||||||||
Sbjct: 48 ttcatatcacagccatttttgacgagtt 75




>35353_ame-mir-13b:mirbase
          Length = 79

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 45 ttcatatcacagccatttt 63
          |||||||||||||||||||
Sbjct: 46 ttcatatcacagccatttt 64




>35527_bmo-mir-13b:mirbase
          Length = 80

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                     
Query: 46 tcatatcacagcca-ttttgacgagtt 71
          |||||||||||||| ||||||||||||
Sbjct: 45 tcatatcacagccatttttgacgagtt 71




>37572_ngi-mir-13a:mirbase
          Length = 85

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 47 catatcacagccattttga 65
          |||||||||||||||||||
Sbjct: 49 catatcacagccattttga 67




>37606_nlo-mir-13a:mirbase
          Length = 85

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 47 catatcacagccattttga 65
          |||||||||||||||||||
Sbjct: 49 catatcacagccattttga 67




>37639_nvi-mir-13a:mirbase
          Length = 103

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 47 catatcacagccattttga 65
          |||||||||||||||||||
Sbjct: 65 catatcacagccattttga 83