miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37352_dvi-mir-33:mirbase
Length = 92
Score = 125 bits (63), Expect = 6e-30
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 2 ggagctgtcacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaat 61
|||||||| ||| ||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct: 2 ggagctgttacggaggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaat 61
Query: 62 acaactgcagtgcaagctccgtgcagttcac 92
|||||||||||||||||||||||||||||||
Sbjct: 62 acaactgcagtgcaagctccgtgcagttcac 92
>37506_dya-mir-33:mirbase
Length = 90
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/86 (89%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 7 tgtcacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaatacaac 66
|||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct: 7 tgtcacgaaggtgcattgtagtcgcattgtctgtcc--caattgcttcaggcaatacaac 64
Query: 67 tgcagtgcaagctccgtgcagttcac 92
| |||||||||||| ||||| |||||
Sbjct: 65 ttcagtgcaagctctgtgcatttcac 90
>36178_der-mir-33:mirbase
Length = 90
Score = 87.7 bits (44), Expect = 1e-18
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 10 cacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaatacaactgc 69
||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |
Sbjct: 10 cacgaaggtgcattgtagtcgcattgtctgtcc--caattgcttcaggcaatacaacttc 67
Query: 70 agtgcaagctccgtgcagttcac 92
||||||||||| ||||| |||||
Sbjct: 68 agtgcaagctctgtgcatttcac 90
>36371_dme-mir-33:mirbase
Length = 99
Score = 87.7 bits (44), Expect = 1e-18
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 10 cacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaatacaactgc 69
||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |
Sbjct: 19 cacgaaggtgcattgtagtcgcattgtctgtcc--caattgcttcaggcaatacaacttc 76
Query: 70 agtgcaagctccgtgcagttcac 92
||||||||||| ||||| |||||
Sbjct: 77 agtgcaagctctgtgcatttcac 99
>36372_dme-mir-33:mirbase
Length = 99
Score = 87.7 bits (44), Expect = 1e-18
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 10 cacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaatacaactgc 69
||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |
Sbjct: 19 cacgaaggtgcattgtagtcgcattgtctgtcc--caattgcttcaggcaatacaacttc 76
Query: 70 agtgcaagctccgtgcagttcac 92
||||||||||| ||||| |||||
Sbjct: 77 agtgcaagctctgtgcatttcac 99
>36776_dmo-mir-33:mirbase
Length = 93
Score = 87.7 bits (44), Expect = 1e-18
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 2 ggagctgtcacgaaggtgcattgtagtcgcattgtctgtc-caaaaattgcatgcggcaa 60
|||||||| ||| |||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 2 ggagctgtgacggaggtgcattgtagtcgcattgtctgtatcctttattctctgcggcaa 61
Query: 61 tacaactgcagtgcaagctccgtgcagttcac 92
||||||||||||||||||||||||||||||||
Sbjct: 62 tacaactgcagtgcaagctccgtgcagttcac 93
>37138_dse-mir-33:mirbase
Length = 90
Score = 87.7 bits (44), Expect = 1e-18
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 10 cacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaatacaactgc 69
||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |
Sbjct: 10 cacgaaggtgcattgtagtcgcattgtctgtcc--caattgcttcaggcaatacaacttc 67
Query: 70 agtgcaagctccgtgcagttcac 92
||||||||||| ||||| |||||
Sbjct: 68 agtgcaagctctgtgcatttcac 90
>37214_dsi-mir-33:mirbase
Length = 90
Score = 87.7 bits (44), Expect = 1e-18
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 10 cacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaatacaactgc 69
||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |
Sbjct: 10 cacgaaggtgcattgtagtcgcattgtctgtcc--caattgcttcaggcaatacaacttc 67
Query: 70 agtgcaagctccgtgcagttcac 92
||||||||||| ||||| |||||
Sbjct: 68 agtgcaagctctgtgcatttcac 90
>36100_dan-mir-33:mirbase
Length = 90
Score = 79.8 bits (40), Expect = 3e-16
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 2 ggagctgtcacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaat 61
|||| ||||||| |||||||||||||||||||||||||||| | |||| ||||||
Sbjct: 2 ggagatgtcacgcaggtgcattgtagtcgcattgtctgtcc--cacttgctccaggcaat 59
Query: 62 acaactgcagtgcaagctccgtgcagttcac 92
||||||||||||||||||| ||||| |||||
Sbjct: 60 acaactgcagtgcaagctctgtgcatttcac 90
>36849_dpe-mir-33:mirbase
Length = 90
Score = 63.9 bits (32), Expect = 2e-11
Identities = 72/83 (86%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 10 cacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgc-ggcaatacaactg 68
|||| |||||||||||||||||||||||||||| | ||| | | |||||||||||||
Sbjct: 10 cacgcaggtgcattgtagtcgcattgtctgtcc--atcttgatttcaggcaatacaactg 67
Query: 69 cagtgcaagctccgtgcagttca 91
|||||||||||| ||||| ||||
Sbjct: 68 cagtgcaagctctgtgcatttca 90
>37429_dwi-mir-33:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 10 cacgaaggtgcattgtagtcgcattgtctgt 40
|||||||||||||||||||||||||||||||
Sbjct: 8 cacgaaggtgcattgtagtcgcattgtctgt 38
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 56 ggcaatacaactgcagtgcaagctccgtg 84
|||||||||||||||||||||||| ||||
Sbjct: 73 ggcaatacaactgcagtgcaagcttcgtg 101
>36925_dps-mir-33:mirbase
Length = 91
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 cacgaaggtgcattgtagtcgcattgtctgtcca 43
|||| |||||||||||||||||||||||||||||
Sbjct: 11 cacgcaggtgcattgtagtcgcattgtctgtcca 44
