miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AANI01017473.1/521223-521153 7244:Drosophila
virilis
Length = 71
Score = 95.6 bits (48), Expect = 9e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaatacaactgcagtgc 74
||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 63
Query: 75 aagctccg 82
||||||||
Sbjct: 64 aagctccg 71
>RF00667;mir-33;AC154052.1/87680-87612 7227:Drosophila
melanogaster (fruit fly)
Length = 69
Score = 75.8 bits (38), Expect = 9e-14
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 12 cgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaatacaactgcag 71
||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||
Sbjct: 1 cgaaggtgcattgtagtcgcattgtctgtcc--caattgcttcaggcaatacaacttcag 58
Query: 72 tgcaagctc 80
|||||||||
Sbjct: 59 tgcaagctc 67
>RF00667;mir-33;AAPU01011618.1/111826-111755 7230:Drosophila
mojavensis
Length = 72
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 tgcggcaatacaactgcagtgcaagctccg 82
||||||||||||||||||||||||||||||
Sbjct: 43 tgcggcaatacaactgcagtgcaagctccg 72
>RF00667;mir-33;AAFS01000103.1/61981-62050 46245:Drosophila
pseudoobscura pseudoobscura
Length = 70
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtcca 43
|||||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgtcca 32
>RF00667;mir-33;AAQB01006223.1/189436-189525 7260:Drosophila
willistoni
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 cgaaggtgcattgtagtcgcattgtctgt 40
|||||||||||||||||||||||||||||
Sbjct: 1 cgaaggtgcattgtagtcgcattgtctgt 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 ggcaatacaactgcagtgcaagct 79
||||||||||||||||||||||||
Sbjct: 64 ggcaatacaactgcagtgcaagct 87
