miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;AANI01014607.1/367710-367617 7244:Drosophila
virilis
Length = 94
Score = 165 bits (83), Expect = 1e-40
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaactgacaaatcacagcc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgtggccaattgacaaatcacagcc 62
Query: 61 actatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||
Sbjct: 63 actatcttcactgccgccgcgacaagc 89
>RF00711;mir-449;AAPQ01006467.1/383882-383780 7220:Drosophila
erecta
Length = 103
Score = 103 bits (52), Expect = 4e-22
Identities = 84/96 (87%), Gaps = 9/96 (9%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ctgacaa 51
|||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgtagccaatcattgcttgtgacaa 62
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||||||||||
Sbjct: 63 ctcacagccactatcttcactgccgccgcgacaagc 98
>RF00711;mir-449;AASS01031694.1/773-875 7240:Drosophila simulans
Length = 103
Score = 103 bits (52), Expect = 4e-22
Identities = 84/96 (87%), Gaps = 9/96 (9%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ctgacaa 51
|||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 62
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||||||||||
Sbjct: 63 ttcacagccactatcttcactgccgccgcgacaagc 98
>RF00711;mir-449;AAFS01000411.1/37510-37407 46245:Drosophila
pseudoobscura pseudoobscura
Length = 104
Score = 91.7 bits (46), Expect = 1e-18
Identities = 83/97 (85%), Gaps = 10/97 (10%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa----------ctgaca 50
|||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttgacc 62
Query: 51 aatcacagccactatcttcactgccgccgcgacaagc 87
| |||||||||||||||||||||||||||||||||||
Sbjct: 63 attcacagccactatcttcactgccgccgcgacaagc 99
>RF00711;mir-449;AAQB01008630.1/408110-408004 7260:Drosophila
willistoni
Length = 107
Score = 79.8 bits (40), Expect = 5e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa 44
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgtagccaa 46
>RF00711;mir-449;AAPP01019533.1/13885-13988 7217:Drosophila
ananassae
Length = 104
Score = 75.8 bits (38), Expect = 8e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tggctatgcgctttggcagtgtggttagctggttgtgt 40
Score = 69.9 bits (35), Expect = 5e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 53 tcacagccactatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||||||||||
Sbjct: 65 tcacagccactatcttcactgccgccgcgacaagc 99
>RF00711;mir-449;AAZO01004205.1/1293-1391 121224:Pediculus humanus
corporis (human body louse)
Length = 99
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgtgg 40
||||||||||||||||||||||||||||
Sbjct: 15 ttggcagtgtggttagctggttgtgtgg 42
>RF00711;mir-449;ABKQ02014207.1/244697-244790 377270:Anopheles
gambiae S
Length = 94
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 cgctttggcagtgtggttagctggttgtgtgg 40
|||| |||||||||||||||||||||||||||
Sbjct: 12 cgctctggcagtgtggttagctggttgtgtgg 43
>RF00711;mir-449;BABH01019946.1/3350-3261 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||
Sbjct: 15 ttggcagtgtggttagctggttgtgt 40
>RF00711;mir-449;AAZX01003771.1/10900-10991 7425:Nasonia
vitripennis (jewel wasp)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||
Sbjct: 15 ttggcagtgtggttagctggttgtgt 40
>RF00711;mir-449;AAGE02012646.1/4275-4404 7159:Aedes aegypti
(yellow fever mosquito)
Length = 130
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 cgctttggcagtgtggttagctggttgtgt 38
|||| |||||||||||||||||||||||||
Sbjct: 11 cgctatggcagtgtggttagctggttgtgt 40
>RF00711;mir-449;AADG05001988.1/87357-87449 7460:Apis mellifera
(honey bee)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgtggc 41
|||||||||| ||||||||||||||||||
Sbjct: 15 ttggcagtgttgttagctggttgtgtggc 43
>RF00711;mir-449;AAJJ01000475.1/25339-25252 7070:Tribolium
castaneum (red flour beetle)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgtgt 38
|||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgt 40
>RF00711;mir-449;AAQA01000334.1/14819-14733 6279:Brugia malayi
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgt 36
|||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgt 38
